Variant report

Variant	rs62358917
Chromosome Location	chr5:37774552-37774553
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11738696	0.83[AMR][1000 genomes]
rs56053816	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62358886	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62358887	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62358892	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62358893	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62358922	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62358923	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62358924	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62358925	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62358926	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62358927	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62358928	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62358930	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62358931	0.88[AMR][1000 genomes]
rs62358932	0.83[AMR][1000 genomes]
rs62358933	0.83[AMR][1000 genomes]
rs62360366	0.83[AMR][1000 genomes]
rs62360370	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949716	chr5:37179341-37967352	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
2	nsv1023871	chr5:37330018-37804744	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv537729	chr5:37330018-37804744	Weak transcription Flanking Active TSS Strong transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv597846	chr5:37430215-37813591	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:37773200-37776000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr5:37773200-37777000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:37773800-37776200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr5:37774000-37776000	Weak transcription	Osteobl	bone
5	chr5:37774000-37777200	Weak transcription	NH-A	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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