Variant report
Variant | rs62358922 |
---|---|
Chromosome Location | chr5:37778486-37778487 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs11738696 | 0.83[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs56053816 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs62358886 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs62358887 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs62358892 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs62358893 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs62358917 | 1.00[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rs62358923 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs62358924 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs62358925 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs62358926 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs62358927 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs62358928 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rs62358930 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs62358931 | 0.88[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs62358932 | 0.83[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs62358933 | 0.83[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs62360366 | 0.83[AMR][1000 genomes] |
rs62360370 | 0.83[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv949716 | chr5:37179341-37967352 | Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 58 gene(s) | inside rSNPs | diseases |
2 | nsv1023871 | chr5:37330018-37804744 | Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 23 gene(s) | inside rSNPs | diseases |
3 | nsv537729 | chr5:37330018-37804744 | Weak transcription Flanking Active TSS Strong transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 23 gene(s) | inside rSNPs | diseases |
4 | nsv597846 | chr5:37430215-37813591 | Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr5:37778000-37785000 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |