Variant report

Variant	rs62358886
Chromosome Location	chr5:37757687-37757688
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11738696	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56053816	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62358887	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62358892	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62358893	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62358917	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62358922	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62358923	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62358924	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62358925	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62358926	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62358927	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62358928	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62358930	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62358931	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62358932	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62358933	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62360366	0.83[AMR][1000 genomes]
rs62360370	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949716	chr5:37179341-37967352	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
2	nsv1023871	chr5:37330018-37804744	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv537729	chr5:37330018-37804744	Weak transcription Flanking Active TSS Strong transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv597846	chr5:37430215-37813591	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv881383	chr5:37485316-37773877	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:37721400-37764200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:37728000-37758800	Weak transcription	Brain Germinal Matrix	brain
3	chr5:37744200-37769200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr5:37744600-37769400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr5:37748800-37760000	Weak transcription	Fetal Brain Female	brain
6	chr5:37750200-37757800	Weak transcription	Colon Smooth Muscle	Colon
7	chr5:37752000-37761200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr5:37752000-37762200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr5:37752000-37767200	Weak transcription	HSMMtube	muscle
10	chr5:37752200-37769200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr5:37752400-37769200	Weak transcription	NHDF-Ad	bronchial
12	chr5:37752400-37769400	Weak transcription	Osteobl	bone
13	chr5:37753400-37758800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr5:37753800-37758800	Weak transcription	Primary B cells from cord blood	blood
15	chr5:37754000-37769200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr5:37754600-37758000	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr5:37756600-37758200	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr5:37756600-37761600	Weak transcription	Primary T cells from cord blood	blood
19	chr5:37757400-37757800	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr5:37757400-37757800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr5:37757400-37757800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
22	chr5:37757400-37757800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr5:37757600-37757800	ZNF genes & repeats	A549	lung
24	chr5:37757600-37758200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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