Variant report

Variant	rs62358924
Chromosome Location	chr5:37780955-37780956
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11738696	0.82[EUR][1000 genomes]
rs56053816	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62358886	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62358887	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62358892	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62358893	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62358917	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62358922	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62358923	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62358925	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62358926	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62358927	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62358928	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62358930	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62358931	0.82[EUR][1000 genomes]
rs62358932	0.82[EUR][1000 genomes]
rs62358933	0.82[EUR][1000 genomes]
rs73751147	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949716	chr5:37179341-37967352	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
2	nsv1023871	chr5:37330018-37804744	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv537729	chr5:37330018-37804744	Weak transcription Flanking Active TSS Strong transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv597846	chr5:37430215-37813591	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:37778000-37785000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:37780800-37781800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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