Variant report

Variant	rs11952014
Chromosome Location	chr5:51962766-51962767
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:51962186..51964324-chr5:51971783..51973815,2	MCF-7	breast:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10059225	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10072067	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10077122	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10512979	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11949933	1.00[ASN][1000 genomes]
rs13155491	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13158962	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13356456	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13358437	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1450948	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1585698	1.00[ASN][1000 genomes]
rs2406194	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2406195	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs350415	1.00[ASN][1000 genomes]
rs350446	1.00[ASN][1000 genomes]
rs350447	1.00[ASN][1000 genomes]
rs350448	1.00[ASN][1000 genomes]
rs350449	1.00[ASN][1000 genomes]
rs350451	1.00[ASN][1000 genomes]
rs350454	1.00[ASN][1000 genomes]
rs350455	1.00[ASN][1000 genomes]
rs350456	1.00[ASN][1000 genomes]
rs350457	1.00[ASN][1000 genomes]
rs350459	1.00[ASN][1000 genomes]
rs350460	1.00[ASN][1000 genomes]
rs350462	1.00[ASN][1000 genomes]
rs351909	1.00[ASN][1000 genomes]
rs35422331	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35949279	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36040466	1.00[ASN][1000 genomes]
rs588159	1.00[ASN][1000 genomes]
rs588665	1.00[ASN][1000 genomes]
rs601743	1.00[ASN][1000 genomes]
rs606704	1.00[ASN][1000 genomes]
rs619148	1.00[ASN][1000 genomes]
rs62358666	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62358702	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs634323	1.00[ASN][1000 genomes]
rs636028	1.00[ASN][1000 genomes]
rs638304	1.00[ASN][1000 genomes]
rs646638	1.00[ASN][1000 genomes]
rs647974	1.00[ASN][1000 genomes]
rs648894	1.00[ASN][1000 genomes]
rs649787	1.00[ASN][1000 genomes]
rs650009	1.00[ASN][1000 genomes]
rs650310	1.00[ASN][1000 genomes]
rs652181	1.00[ASN][1000 genomes]
rs654854	1.00[ASN][1000 genomes]
rs655137	1.00[ASN][1000 genomes]
rs662516	1.00[ASN][1000 genomes]
rs667698	1.00[ASN][1000 genomes]
rs669512	1.00[ASN][1000 genomes]
rs676843	1.00[ASN][1000 genomes]
rs677349	1.00[ASN][1000 genomes]
rs678501	1.00[ASN][1000 genomes]
rs682160	1.00[ASN][1000 genomes]
rs71633440	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs889289	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752072	chr5:51649222-51972277	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2754787	chr5:51688543-52193243	Enhancers Active TSS Genic enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv462187	chr5:51758804-52333420	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	nsv598163	chr5:51758804-52333420	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
5	nsv471013	chr5:51779197-52339114	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:51958000-51965800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr5:51961800-51964600	Weak transcription	Fetal Muscle Leg	muscle
3	chr5:51962000-51964400	Weak transcription	NHDF-Ad	bronchial
4	chr5:51962600-51962800	Enhancers	Spleen	Spleen

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