Variant report

Variant	rs13158962
Chromosome Location	chr5:51986097-51986098
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10059225	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10072067	1.00[ASN][1000 genomes]
rs10077122	1.00[ASN][1000 genomes]
rs10512979	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11949933	1.00[ASN][1000 genomes]
rs11952014	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13155491	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13157816	0.88[AMR][1000 genomes]
rs13163634	0.88[AMR][1000 genomes]
rs13165120	0.83[AMR][1000 genomes]
rs13172960	0.88[AMR][1000 genomes]
rs13185633	0.81[AMR][1000 genomes]
rs13356456	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13358437	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1450948	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1585698	1.00[ASN][1000 genomes]
rs2406194	1.00[ASN][1000 genomes]
rs2406195	1.00[ASN][1000 genomes]
rs350415	1.00[ASN][1000 genomes]
rs350446	1.00[ASN][1000 genomes]
rs350447	1.00[ASN][1000 genomes]
rs350448	1.00[ASN][1000 genomes]
rs350449	1.00[ASN][1000 genomes]
rs350451	1.00[ASN][1000 genomes]
rs350454	1.00[ASN][1000 genomes]
rs350455	1.00[ASN][1000 genomes]
rs350456	1.00[ASN][1000 genomes]
rs350457	1.00[ASN][1000 genomes]
rs350459	1.00[ASN][1000 genomes]
rs350460	1.00[ASN][1000 genomes]
rs350462	1.00[ASN][1000 genomes]
rs351909	1.00[ASN][1000 genomes]
rs35422331	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35949279	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs36040466	1.00[ASN][1000 genomes]
rs588159	1.00[ASN][1000 genomes]
rs588665	1.00[ASN][1000 genomes]
rs601743	1.00[ASN][1000 genomes]
rs606704	1.00[ASN][1000 genomes]
rs619148	1.00[ASN][1000 genomes]
rs62358666	1.00[ASN][1000 genomes]
rs62358702	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62361161	0.83[AMR][1000 genomes]
rs634323	1.00[ASN][1000 genomes]
rs636028	1.00[ASN][1000 genomes]
rs638304	1.00[ASN][1000 genomes]
rs646638	1.00[ASN][1000 genomes]
rs647974	1.00[ASN][1000 genomes]
rs648894	1.00[ASN][1000 genomes]
rs649787	1.00[ASN][1000 genomes]
rs650009	1.00[ASN][1000 genomes]
rs650310	1.00[ASN][1000 genomes]
rs652181	1.00[ASN][1000 genomes]
rs654854	1.00[ASN][1000 genomes]
rs655137	1.00[ASN][1000 genomes]
rs662516	1.00[ASN][1000 genomes]
rs667698	1.00[ASN][1000 genomes]
rs669512	1.00[ASN][1000 genomes]
rs676843	1.00[ASN][1000 genomes]
rs677349	1.00[ASN][1000 genomes]
rs678501	1.00[ASN][1000 genomes]
rs682160	1.00[ASN][1000 genomes]
rs71633440	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs889289	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754787	chr5:51688543-52193243	Enhancers Active TSS Genic enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv462187	chr5:51758804-52333420	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv598163	chr5:51758804-52333420	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	nsv471013	chr5:51779197-52339114	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:51971800-51987400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr5:51978800-51986800	Weak transcription	NHLF	lung
3	chr5:51979000-51986200	Weak transcription	HSMMtube	muscle
4	chr5:51979200-51986200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr5:51980600-51986800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr5:51984800-51986200	Weak transcription	NHDF-Ad	bronchial
7	chr5:51985400-51989200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr5:51985600-51986400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr5:51985600-51988000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr5:51985600-51988400	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr5:51985600-51988400	Enhancers	Hela-S3	cervix
12	chr5:51985600-51990600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr5:51985600-51993000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr5:51985800-51986200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr5:51985800-51986200	Enhancers	Lung	lung
16	chr5:51985800-51986200	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr5:51985800-51986400	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr5:51985800-51986400	Enhancers	Ovary	ovary
19	chr5:51985800-51986800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr5:51985800-51989000	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr5:51985800-51989600	Enhancers	Fetal Lung	lung
22	chr5:51986000-51986200	Enhancers	H1 Cell Line	embryonic stem cell
23	chr5:51986000-51986200	Enhancers	Fetal Muscle Trunk	muscle
24	chr5:51986000-51986400	Enhancers	Stomach Smooth Muscle	stomach
25	chr5:51986000-51986600	Enhancers	Adipose Nuclei	Adipose
26	chr5:51986000-51986600	Enhancers	Fetal Muscle Leg	muscle
27	chr5:51986000-51988600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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