Variant report

Variant	rs11952521
Chromosome Location	chr5:119383268-119383269
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1035406	0.94[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12518525	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12522947	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs164482	0.82[ASN][1000 genomes]
rs164483	0.82[ASN][1000 genomes]
rs164484	0.82[ASN][1000 genomes]
rs255808	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:45 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024455	chr5:118770429-119487982	Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1016271	chr5:118836891-119487982	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv882778	chr5:118972113-119384039	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv599568	chr5:119199265-119414589	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1023146	chr5:119301891-119623417	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv537883	chr5:119301891-119623417	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv3331559	chr5:119306944-119536554	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv532200	chr5:119317901-120102513	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv882780	chr5:119332670-119488924	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	esv1827579	chr5:119356669-119435037	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	esv1827829	chr5:119356669-119435037	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	esv1846556	chr5:119356669-119435037	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
13	esv1849212	chr5:119356669-119435037	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
14	nsv882781	chr5:119369334-119557828	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	esv3468526	chr5:119378153-119384651	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
16	esv1807500	chr5:119378643-119383902	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
17	esv1820607	chr5:119378643-119383902	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
18	esv1833637	chr5:119378643-119383902	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
19	esv1841936	chr5:119378643-119383902	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
20	esv3496321	chr5:119378703-119386251	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
21	esv3496320	chr5:119378853-119385901	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
22	esv3496322	chr5:119378853-119385901	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
23	nsv820208	chr5:119378986-119387654	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
24	esv3524847	chr5:119379003-119383801	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
25	esv3468524	chr5:119379078-119384026	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
26	esv3524851	chr5:119379428-119383701	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
27	esv1807698	chr5:119380452-119383902	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
28	esv1808095	chr5:119380452-119383902	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
29	esv1812958	chr5:119380452-119383902	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
30	esv1819330	chr5:119380452-119383902	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
31	esv1821623	chr5:119380452-119383902	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
32	esv1824586	chr5:119380452-119383902	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
33	esv1829648	chr5:119380452-119383902	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
34	esv1831438	chr5:119380452-119383902	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
35	esv1841075	chr5:119380452-119383902	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
36	esv1846302	chr5:119380452-119383902	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
37	esv1846423	chr5:119380452-119383902	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
38	esv1846978	chr5:119380452-119383902	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
39	esv1850875	chr5:119380452-119383902	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
40	esv2612831	chr5:119380506-119386460	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
41	nsv599578	chr5:119380512-119393520	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
42	esv1834575	chr5:119380512-119434193	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
43	nsv599579	chr5:119380512-119445061	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
44	nsv823196	chr5:119380620-119386690	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
45	esv3322998	chr5:119382878-119385426	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:119383200-119385000	Weak transcription	Primary neutrophils fromperipheralblood	blood

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