Variant report

Variant	rs11953802
Chromosome Location	chr5:124669819-124669820
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1371367	0.82[ASN][1000 genomes]
rs1607278	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1838449	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2197406	0.81[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2218447	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2589378	0.85[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2589381	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2589382	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2678180	0.95[ASN][1000 genomes]
rs2678181	0.96[ASN][1000 genomes]
rs2678182	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6595608	0.94[ASN][1000 genomes]
rs7701571	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7720003	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124649400-124672400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:124661800-124675800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:124663400-124672200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr5:124663800-124672200	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr5:124667200-124672400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr5:124667400-124672400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr5:124667600-124672200	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr5:124667600-124672400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr5:124667600-124673000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr5:124668000-124672400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr5:124668200-124672200	Weak transcription	Brain Hippocampus Middle	brain
12	chr5:124668600-124672800	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr5:124668600-124682200	Weak transcription	Fetal Brain Male	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links