Variant report

Variant	rs2589378
Chromosome Location	chr5:124673628-124673629
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11953802	0.85[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs1371367	0.83[ASN][1000 genomes]
rs1607278	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1838449	0.97[ASN][1000 genomes]
rs2197406	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2218447	0.88[ASN][1000 genomes]
rs2589381	0.81[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2589382	0.97[ASN][1000 genomes]
rs2678180	0.97[ASN][1000 genomes]
rs2678181	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2678182	0.98[ASN][1000 genomes]
rs6595608	0.94[ASN][1000 genomes]
rs7701571	0.95[ASN][1000 genomes]
rs7720003	0.94[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124661800-124675800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:124668600-124682200	Weak transcription	Fetal Brain Male	brain
3	chr5:124672400-124673800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:124672400-124673800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr5:124672600-124673800	Enhancers	H9 Cell Line	embryonic stem cell
6	chr5:124673200-124683800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:124673400-124674600	Weak transcription	Brain Anterior Caudate	brain
8	chr5:124673400-124683200	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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