Variant report

Variant	rs11954251
Chromosome Location	chr5:29199452-29199453
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:29191166..29194055-chr5:29197511..29200144,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11955839	0.83[EUR][1000 genomes]
rs11959091	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs160307	1.00[ASN][1000 genomes]
rs160311	1.00[ASN][1000 genomes]
rs16898735	1.00[ASN][1000 genomes]
rs16898753	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17552964	0.81[EUR][1000 genomes]
rs17552992	0.83[EUR][1000 genomes]
rs17553624	0.83[EUR][1000 genomes]
rs17623451	0.83[EUR][1000 genomes]
rs177934	1.00[ASN][1000 genomes]
rs4115403	1.00[ASN][1000 genomes]
rs56671843	1.00[ASN][1000 genomes]
rs57319851	1.00[ASN][1000 genomes]
rs57958129	1.00[ASN][1000 genomes]
rs58162291	1.00[ASN][1000 genomes]
rs58550915	1.00[ASN][1000 genomes]
rs73060390	1.00[ASN][1000 genomes]
rs73060398	1.00[ASN][1000 genomes]
rs73062309	1.00[ASN][1000 genomes]
rs73062332	1.00[ASN][1000 genomes]
rs73062350	1.00[ASN][1000 genomes]
rs73062358	1.00[ASN][1000 genomes]
rs73062368	1.00[ASN][1000 genomes]
rs73079453	1.00[ASN][1000 genomes]
rs73079454	1.00[ASN][1000 genomes]
rs73079458	1.00[ASN][1000 genomes]
rs73079467	1.00[ASN][1000 genomes]
rs73079472	1.00[ASN][1000 genomes]
rs824328	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023990	chr5:28917253-29220447	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	esv3528360	chr5:29069255-29548659	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	esv3528361	chr5:29069255-29548659	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
4	nsv1016603	chr5:29102713-29843965	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
5	nsv537712	chr5:29102713-29843965	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
6	nsv1030526	chr5:29125802-29204186	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv1031329	chr5:29177677-29760923	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
8	nsv537713	chr5:29177677-29760923	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
9	nsv880414	chr5:29194872-29495564	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:29198600-29199800	Enhancers	Hela-S3	cervix

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