Variant report

Variant	rs16898753
Chromosome Location	chr5:29160807-29160808
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11954251	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11955839	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11959091	1.00[ASN][1000 genomes]
rs160307	1.00[ASN][1000 genomes]
rs160311	1.00[ASN][1000 genomes]
rs16898720	1.00[CHB][hapmap]
rs16898735	1.00[ASN][1000 genomes]
rs17552964	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17552992	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17553624	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17623451	0.98[EUR][1000 genomes]
rs177934	1.00[ASN][1000 genomes]
rs4115403	1.00[ASN][1000 genomes]
rs56671843	1.00[ASN][1000 genomes]
rs57319851	1.00[ASN][1000 genomes]
rs57958129	1.00[ASN][1000 genomes]
rs58162291	1.00[ASN][1000 genomes]
rs58550915	1.00[ASN][1000 genomes]
rs73060390	1.00[ASN][1000 genomes]
rs73060398	1.00[ASN][1000 genomes]
rs73062309	1.00[ASN][1000 genomes]
rs73062332	1.00[ASN][1000 genomes]
rs73062350	1.00[ASN][1000 genomes]
rs73062358	1.00[ASN][1000 genomes]
rs73062368	1.00[ASN][1000 genomes]
rs73079453	1.00[ASN][1000 genomes]
rs73079454	1.00[ASN][1000 genomes]
rs73079458	1.00[ASN][1000 genomes]
rs73079467	1.00[ASN][1000 genomes]
rs73079472	1.00[ASN][1000 genomes]
rs7729408	1.00[CHB][hapmap]
rs824328	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023990	chr5:28917253-29220447	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	esv3528360	chr5:29069255-29548659	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	esv3528361	chr5:29069255-29548659	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
4	nsv1022253	chr5:29076460-29195987	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv1016603	chr5:29102713-29843965	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
6	nsv537712	chr5:29102713-29843965	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
7	nsv1030526	chr5:29125802-29204186	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
8	nsv964827	chr5:29138557-29198352	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:29154000-29162200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr5:29158400-29162200	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr5:29158600-29161800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr5:29159000-29161200	Weak transcription	Liver	Liver
5	chr5:29160400-29161600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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