Variant report

Variant	rs11955015
Chromosome Location	chr5:107164703-107164704
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10039402	0.83[EUR][1000 genomes]
rs10051785	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1549923	0.83[EUR][1000 genomes]
rs1549924	0.88[TSI][hapmap];0.83[EUR][1000 genomes]
rs17160654	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17160700	0.85[CEU][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34830286	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs57994859	0.83[EUR][1000 genomes]
rs67534664	0.83[EUR][1000 genomes]
rs67795753	0.83[EUR][1000 genomes]
rs7712414	0.83[EUR][1000 genomes]
rs7730902	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830440	chr5:107074116-107278905	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv329767	chr5:107161697-107165178	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107144400-107167600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:107157200-107166600	Weak transcription	NHDF-Ad	bronchial
3	chr5:107161600-107167000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr5:107162000-107167400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr5:107162200-107166400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr5:107162200-107167200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr5:107162600-107166800	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr5:107162600-107167200	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr5:107162600-107167600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr5:107162800-107166600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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