Variant report

Variant	rs17160654
Chromosome Location	chr5:107171319-107171320
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10039402	1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs10051785	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11955015	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1549923	0.80[EUR][1000 genomes]
rs1549924	1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs17160700	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34830286	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57994859	0.80[EUR][1000 genomes]
rs67534664	0.80[EUR][1000 genomes]
rs67795753	0.80[EUR][1000 genomes]
rs7712414	0.80[EUR][1000 genomes]
rs7730902	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830440	chr5:107074116-107278905	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107168000-107180200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:107168400-107176200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr5:107170200-107171800	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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