Variant report

Variant	rs11955845
Chromosome Location	chr5:58439884-58439885
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs13160617	0.89[EUR][1000 genomes]
rs13164981	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13178514	0.81[EUR][1000 genomes]
rs13180599	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13185063	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13185828	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13185996	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13186000	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13186012	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13186015	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16877155	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2059191	0.86[EUR][1000 genomes]
rs2409627	0.92[EUR][1000 genomes]
rs33950471	0.94[EUR][1000 genomes]
rs34235034	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56273963	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73758114	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv881702	chr5:58432413-58474854	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58424000-58447000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr5:58424200-58446200	Weak transcription	Fetal Intestine Large	intestine
3	chr5:58424200-58446600	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr5:58427200-58454000	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr5:58429800-58447200	Weak transcription	Left Ventricle	heart
6	chr5:58430000-58442600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr5:58431000-58440000	Weak transcription	Fetal Lung	lung
8	chr5:58433000-58451600	Weak transcription	Fetal Muscle Leg	muscle
9	chr5:58435400-58442400	Weak transcription	Hela-S3	cervix
10	chr5:58437400-58454000	Weak transcription	Rectal Smooth Muscle	rectum
11	chr5:58437800-58444800	Weak transcription	Psoas Muscle	Psoas
12	chr5:58438000-58445200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr5:58439000-58484000	Weak transcription	Fetal Kidney	kidney
14	chr5:58439400-58440200	Enhancers	Adipose Nuclei	Adipose
15	chr5:58439400-58440200	Enhancers	Colon Smooth Muscle	Colon
16	chr5:58439400-58440600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr5:58439600-58440200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr5:58439600-58440200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr5:58439600-58440200	Enhancers	Brain Anterior Caudate	brain
20	chr5:58439600-58440200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
21	chr5:58439600-58440200	Enhancers	GM12878-XiMat	blood
22	chr5:58439600-58440400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr5:58439600-58441600	Flanking Active TSS	A549	lung
24	chr5:58439800-58440000	Flanking Active TSS	Fetal Heart	heart
25	chr5:58439800-58440200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr5:58439800-58440200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr5:58439800-58440200	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
28	chr5:58439800-58440200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
29	chr5:58439800-58440200	Enhancers	Small Intestine	intestine

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