Variant report

Variant	rs33950471
Chromosome Location	chr5:58449784-58449785
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11955845	0.94[EUR][1000 genomes]
rs13160617	0.93[CEU][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs13164981	0.87[CEU][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13180599	0.93[CEU][hapmap];0.86[EUR][1000 genomes]
rs13185063	0.87[CEU][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13185828	0.87[CEU][hapmap];0.90[TSI][hapmap];0.81[EUR][1000 genomes]
rs13185996	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13186000	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13186012	0.87[CEU][hapmap];0.90[TSI][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13186015	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16877155	0.87[CEU][hapmap];0.81[TSI][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2059191	0.87[CEU][hapmap]
rs2409627	0.93[CEU][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs34235034	0.81[EUR][1000 genomes]
rs35399502	0.88[ASN][1000 genomes]
rs56273963	0.85[EUR][1000 genomes]
rs71626140	0.89[ASN][1000 genomes]
rs73758114	0.83[EUR][1000 genomes]
rs889229	0.93[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv881702	chr5:58432413-58474854	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58427200-58454000	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr5:58433000-58451600	Weak transcription	Fetal Muscle Leg	muscle
3	chr5:58437400-58454000	Weak transcription	Rectal Smooth Muscle	rectum
4	chr5:58439000-58484000	Weak transcription	Fetal Kidney	kidney
5	chr5:58444000-58449800	Genic enhancers	A549	lung
6	chr5:58447000-58450000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr5:58447000-58453400	Enhancers	Primary T cells from cord blood	blood
8	chr5:58447200-58450000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr5:58447400-58449800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr5:58447400-58451200	Weak transcription	Hela-S3	cervix
11	chr5:58447600-58454800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr5:58447600-58464000	Weak transcription	Right Ventricle	heart
13	chr5:58447600-58465200	Weak transcription	Right Atrium	heart
14	chr5:58447600-58473200	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr5:58447600-58473400	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr5:58447600-58479600	Weak transcription	Left Ventricle	heart
17	chr5:58447800-58453000	Weak transcription	Fetal Heart	heart
18	chr5:58448400-58449800	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr5:58448400-58450000	Enhancers	Fetal Thymus	thymus
20	chr5:58448600-58449800	Enhancers	Primary T cells fromperipheralblood	blood
21	chr5:58448600-58449800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr5:58448600-58449800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
23	chr5:58448600-58453400	Weak transcription	Primary hematopoietic stem cells	blood
24	chr5:58448800-58449800	Enhancers	Small Intestine	intestine
25	chr5:58449000-58450000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr5:58449000-58453800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr5:58449000-58453800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr5:58449000-58456400	Weak transcription	Fetal Intestine Large	intestine
29	chr5:58449200-58452200	Weak transcription	HSMM	muscle
30	chr5:58449200-58453000	Weak transcription	Colon Smooth Muscle	Colon
31	chr5:58449200-58453400	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr5:58449200-58453800	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr5:58449200-58454200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr5:58449200-58457000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr5:58449200-58457600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr5:58449400-58473600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr5:58449600-58453800	Weak transcription	Psoas Muscle	Psoas
38	chr5:58449600-58457000	Weak transcription	Primary T helper cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links