Variant report

Variant	rs11955901
Chromosome Location	chr5:74531573-74531574
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11952940	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11959556	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34711940	0.83[AMR][1000 genomes]
rs57091259	0.84[EUR][1000 genomes]
rs57128332	0.84[EUR][1000 genomes]
rs57155346	0.86[AFR][1000 genomes]
rs57350864	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs57923199	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs58869372	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs59226666	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs59388080	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59641773	0.84[EUR][1000 genomes]
rs60342717	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs60349474	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6870950	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6893867	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs6894556	0.84[EUR][1000 genomes]
rs6895538	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6898122	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs73114819	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73114824	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73114825	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73114836	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73114854	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73116837	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73116843	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73116846	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73127360	0.84[EUR][1000 genomes]
rs73127366	0.84[EUR][1000 genomes]
rs73127392	0.84[EUR][1000 genomes]
rs73129052	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs73131026	0.86[AFR][1000 genomes]
rs73131051	0.86[AFR][1000 genomes]
rs73131069	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7717760	0.86[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs7720035	0.84[EUR][1000 genomes]
rs7722905	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016610	chr5:74403611-74627654	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2758000	chr5:74433760-74611714	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2759350	chr5:74433760-74611714	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv882190	chr5:74463185-74554826	Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv882191	chr5:74478078-74554826	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74520400-74532200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:74523800-74532000	Weak transcription	Pancreas	Pancrea
3	chr5:74524600-74532200	Weak transcription	Right Atrium	heart
4	chr5:74526000-74532200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr5:74528200-74531600	Weak transcription	Hela-S3	cervix
6	chr5:74530400-74531600	Weak transcription	NHEK	skin
7	chr5:74530400-74531800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr5:74530400-74531800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr5:74530400-74532000	Weak transcription	HMEC	breast
10	chr5:74531200-74531600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr5:74531200-74531600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr5:74531200-74532000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr5:74531200-74532200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr5:74531400-74531600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr5:74531400-74531600	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr5:74531400-74531600	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr5:74531400-74531600	Enhancers	K562	blood
18	chr5:74531400-74531800	Enhancers	HepG2	liver
19	chr5:74531400-74532000	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr5:74531400-74532000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr5:74531400-74532000	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr5:74531400-74532000	Enhancers	Primary T cells fromperipheralblood	blood
23	chr5:74531400-74532000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
24	chr5:74531400-74532000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr5:74531400-74532000	Enhancers	Fetal Thymus	thymus
26	chr5:74531400-74532000	Enhancers	Thymus	Thymus
27	chr5:74531400-74532200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr5:74531400-74532200	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr5:74531400-74532200	Enhancers	Brain Cingulate Gyrus	brain
30	chr5:74531400-74532200	Enhancers	Fetal Intestine Small	intestine
31	chr5:74531400-74532200	Enhancers	Placenta Amnion	Placenta Amnion
32	chr5:74531400-74532200	Enhancers	NHDF-Ad	bronchial

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