Variant report

Variant	rs57128332
Chromosome Location	chr5:74439418-74439419
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11952940	1.00[EUR][1000 genomes]
rs11955901	0.84[EUR][1000 genomes]
rs11956613	0.92[EUR][1000 genomes]
rs11959556	1.00[EUR][1000 genomes]
rs57091259	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57155346	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs57350864	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57923199	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58869372	1.00[EUR][1000 genomes]
rs59226666	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59388080	0.84[EUR][1000 genomes]
rs59641773	1.00[EUR][1000 genomes]
rs59992948	0.92[EUR][1000 genomes]
rs60342717	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60349474	0.84[EUR][1000 genomes]
rs6870950	1.00[EUR][1000 genomes]
rs6893867	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6894556	1.00[EUR][1000 genomes]
rs6895538	1.00[EUR][1000 genomes]
rs6898122	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73114819	1.00[EUR][1000 genomes]
rs73114824	1.00[EUR][1000 genomes]
rs73114825	1.00[EUR][1000 genomes]
rs73114836	1.00[EUR][1000 genomes]
rs73114854	1.00[EUR][1000 genomes]
rs73116837	1.00[EUR][1000 genomes]
rs73116843	1.00[EUR][1000 genomes]
rs73116846	1.00[EUR][1000 genomes]
rs73127360	1.00[EUR][1000 genomes]
rs73127366	1.00[EUR][1000 genomes]
rs73127392	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73129052	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73131026	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73131031	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73131051	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73131069	1.00[EUR][1000 genomes]
rs7717760	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7720035	1.00[EUR][1000 genomes]
rs7722905	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018865	chr5:74246293-74494552	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv882189	chr5:74356857-74478078	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1016610	chr5:74403611-74627654	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv2758000	chr5:74433760-74611714	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv2759350	chr5:74433760-74611714	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74438600-74439600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:74438800-74439600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr5:74439200-74439800	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr5:74439200-74441600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr5:74439200-74441600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr5:74439200-74441800	Weak transcription	Primary T cells from cord blood	blood
7	chr5:74439200-74442200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr5:74439400-74440000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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