Variant report

Variant	rs11956613
Chromosome Location	chr5:74369213-74369214
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11952940	0.92[EUR][1000 genomes]
rs11959556	0.92[EUR][1000 genomes]
rs57091259	0.91[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs57128332	0.92[EUR][1000 genomes]
rs57155346	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs57350864	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs57923199	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58869372	0.92[EUR][1000 genomes]
rs59226666	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs59641773	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs59992948	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs60342717	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6870950	0.92[EUR][1000 genomes]
rs6893867	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6894556	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6895538	0.92[EUR][1000 genomes]
rs6898122	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73114819	0.92[EUR][1000 genomes]
rs73114824	0.92[EUR][1000 genomes]
rs73114825	0.92[EUR][1000 genomes]
rs73114836	0.92[EUR][1000 genomes]
rs73114854	0.92[EUR][1000 genomes]
rs73116837	0.92[EUR][1000 genomes]
rs73116843	0.92[EUR][1000 genomes]
rs73116846	0.92[EUR][1000 genomes]
rs73127360	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73127366	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73127392	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73129052	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73131026	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73131031	0.83[AMR][1000 genomes]
rs73131051	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73131069	0.92[EUR][1000 genomes]
rs7717760	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7720035	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7722905	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018865	chr5:74246293-74494552	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv882189	chr5:74356857-74478078	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74363600-74373000	Weak transcription	Thymus	Thymus
2	chr5:74367400-74370000	Weak transcription	Stomach Mucosa	stomach
3	chr5:74367800-74371400	Weak transcription	Fetal Thymus	thymus
4	chr5:74368800-74377400	Weak transcription	Hela-S3	cervix

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