Variant report
| Variant | rs11956143 |
|---|---|
| Chromosome Location | chr5:116516388-116516389 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10037464 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10069214 | 0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11241418 | 0.86[ASN][1000 genomes] |
| rs11949654 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13178735 | 1.00[ASN][1000 genomes] |
| rs28509225 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs6595013 | 0.90[ASN][1000 genomes] |
| rs6595014 | 0.90[ASN][1000 genomes] |
| rs6595017 | 0.83[ASN][1000 genomes] |
| rs6868320 | 0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6886341 | 0.90[ASN][1000 genomes] |
| rs6887392 | 1.00[ASN][1000 genomes] |
| rs6887436 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6887868 | 1.00[ASN][1000 genomes] |
| rs6891915 | 0.90[ASN][1000 genomes] |
| rs6892201 | 0.90[ASN][1000 genomes] |
| rs6897500 | 0.90[ASN][1000 genomes] |
| rs7704021 | 0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7715599 | 0.90[ASN][1000 genomes] |
| rs7731335 | 0.83[ASN][1000 genomes] |
| rs9327035 | 0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv882752 | chr5:116505127-116549323 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | n/a | n/a | inside rSNPs | n/a |
| 2 | nsv882753 | chr5:116505127-116549669 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | n/a | n/a | inside rSNPs | n/a |
| 3 | nsv882754 | chr5:116505127-116553503 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | n/a | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:116516200-116517200 | Weak transcription | Brain Anterior Caudate | brain |
