Variant report

Variant	rs6595017
Chromosome Location	chr5:116534647-116534648
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10037464	0.83[ASN][1000 genomes]
rs10069214	0.83[ASN][1000 genomes]
rs11241418	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11949654	0.83[ASN][1000 genomes]
rs11956143	0.83[ASN][1000 genomes]
rs13178735	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6868320	0.82[ASN][1000 genomes]
rs6876281	0.84[EUR][1000 genomes]
rs6886341	0.85[ASN][1000 genomes]
rs6887392	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6887436	0.83[ASN][1000 genomes]
rs6887868	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6891915	0.85[EUR][1000 genomes]
rs6892201	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6897500	0.86[EUR][1000 genomes]
rs7715599	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7731335	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9327035	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882752	chr5:116505127-116549323	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
2	nsv882753	chr5:116505127-116549669	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
3	nsv882754	chr5:116505127-116553503	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
4	nsv1015741	chr5:116525936-116665270	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116532000-116536400	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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