Variant report

Variant	rs6876281
Chromosome Location	chr5:116490554-116490555
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11241418	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13178735	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1389932	0.85[EUR][1000 genomes]
rs6595013	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6595014	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6595017	0.84[EUR][1000 genomes]
rs6868320	0.81[AMR][1000 genomes]
rs6887392	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6887868	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6891915	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6892201	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6897500	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7715599	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7731335	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9327035	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752839	chr5:116461101-116504101	Enhancers Weak transcription Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
2	esv3335438	chr5:116488253-116491451	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
3	esv3333294	chr5:116488903-116491301	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116485600-116497600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:116489000-116494200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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