Variant report

Variant	rs1389932
Chromosome Location	chr5:116521339-116521340
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10068492	0.86[ASN][1000 genomes]
rs10223221	0.93[ASN][1000 genomes]
rs11241418	0.84[EUR][1000 genomes]
rs13154048	1.00[ASN][1000 genomes]
rs13166199	0.93[ASN][1000 genomes]
rs13167829	1.00[ASN][1000 genomes]
rs13178735	0.88[EUR][1000 genomes]
rs13183692	1.00[ASN][1000 genomes]
rs13361759	0.93[ASN][1000 genomes]
rs4920964	0.94[ASN][1000 genomes]
rs6876281	0.85[EUR][1000 genomes]
rs6887392	0.86[EUR][1000 genomes]
rs6887868	0.86[EUR][1000 genomes]
rs6891915	0.86[EUR][1000 genomes]
rs6892201	0.86[EUR][1000 genomes]
rs6892426	0.93[ASN][1000 genomes]
rs6897500	0.86[EUR][1000 genomes]
rs7712671	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7715599	0.83[EUR][1000 genomes]
rs7731335	0.86[EUR][1000 genomes]
rs9327035	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882752	chr5:116505127-116549323	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
2	nsv882753	chr5:116505127-116549669	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
3	nsv882754	chr5:116505127-116553503	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116518000-116525000	Weak transcription	Brain Anterior Caudate	brain
2	chr5:116518200-116525200	Weak transcription	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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