Variant report

Variant	rs7712671
Chromosome Location	chr5:116537250-116537251
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11241418	0.90[EUR][1000 genomes]
rs13178735	0.88[EUR][1000 genomes]
rs1389932	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6887392	0.81[EUR][1000 genomes]
rs6887868	0.81[EUR][1000 genomes]
rs6891915	0.82[EUR][1000 genomes]
rs6892201	0.83[EUR][1000 genomes]
rs6897500	0.81[EUR][1000 genomes]
rs7715599	0.84[EUR][1000 genomes]
rs7731335	0.88[EUR][1000 genomes]
rs7735944	0.81[AMR][1000 genomes]
rs9327035	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882752	chr5:116505127-116549323	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
2	nsv882753	chr5:116505127-116549669	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
3	nsv882754	chr5:116505127-116553503	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
4	nsv1015741	chr5:116525936-116665270	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116536000-116538000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:116536200-116537400	Enhancers	Colon Smooth Muscle	Colon
3	chr5:116536400-116537400	Enhancers	Fetal Lung	lung
4	chr5:116536600-116538000	Enhancers	Fetal Kidney	kidney
5	chr5:116536800-116537600	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr5:116537200-116540400	Weak transcription	Brain Substantia Nigra	brain
7	chr5:116537200-116540600	Weak transcription	Fetal Muscle Leg	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links