Variant report
Variant | rs10068492 |
---|---|
Chromosome Location | chr5:116528042-116528043 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10223221 | 0.82[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs13154048 | 0.81[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs13163160 | 0.81[EUR][1000 genomes] |
rs13166199 | 0.82[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs13167829 | 0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs13168914 | 0.81[EUR][1000 genomes] |
rs13169066 | 0.81[EUR][1000 genomes] |
rs13169286 | 0.85[EUR][1000 genomes] |
rs13183692 | 0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs13361759 | 0.82[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs1389932 | 0.86[ASN][1000 genomes] |
rs17392934 | 0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs17393052 | 0.89[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs34864278 | 0.84[ASN][1000 genomes] |
rs4920964 | 0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs6892426 | 0.93[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv882752 | chr5:116505127-116549323 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | n/a | n/a | inside rSNPs | n/a |
2 | nsv882753 | chr5:116505127-116549669 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | n/a | n/a | inside rSNPs | n/a |
3 | nsv882754 | chr5:116505127-116553503 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | n/a | n/a | inside rSNPs | n/a |
4 | nsv1015741 | chr5:116525936-116665270 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr5:116526400-116530200 | Weak transcription | Fetal Stomach | stomach |