Variant report

Variant	rs13169066
Chromosome Location	chr5:116517639-116517640
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10068492	0.81[EUR][1000 genomes]
rs10223221	0.93[EUR][1000 genomes]
rs13154048	0.94[EUR][1000 genomes]
rs13163160	1.00[ASN][1000 genomes]
rs13166199	0.95[EUR][1000 genomes]
rs13167829	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13168914	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13169286	0.89[ASN][1000 genomes]
rs13183692	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13361759	0.90[EUR][1000 genomes]
rs17392934	0.80[AMR][1000 genomes]
rs17393052	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28509225	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4920964	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7711251	1.00[ASN][1000 genomes]
rs7735944	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882752	chr5:116505127-116549323	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
2	nsv882753	chr5:116505127-116549669	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
3	nsv882754	chr5:116505127-116553503	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116516600-116518200	Enhancers	Brain Hippocampus Middle	brain
2	chr5:116517200-116518000	Enhancers	Brain Anterior Caudate	brain
3	chr5:116517200-116518000	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr5:116517400-116517800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
5	chr5:116517400-116517800	Enhancers	Brain Substantia Nigra	brain
6	chr5:116517600-116517800	Flanking Active TSS	Brain Cingulate Gyrus	brain
7	chr5:116517600-116518000	Enhancers	Adipose Nuclei	Adipose
8	chr5:116517600-116518000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr5:116517600-116519000	Weak transcription	Brain Angular Gyrus	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links