Variant report

Variant	rs4920964
Chromosome Location	chr5:116519027-116519028
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10068492	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10223221	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13154048	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13163160	0.82[EUR][1000 genomes]
rs13166199	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13167829	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13168914	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13169066	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13169286	0.86[EUR][1000 genomes]
rs13183692	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13361759	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1389932	0.94[ASN][1000 genomes]
rs17392934	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17393052	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61690476	0.82[AFR][1000 genomes]
rs6892426	0.87[ASN][1000 genomes]
rs7731456	0.83[AFR][1000 genomes]
rs7735722	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882752	chr5:116505127-116549323	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
2	nsv882753	chr5:116505127-116549669	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
3	nsv882754	chr5:116505127-116553503	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4920964	SEMA6A	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116518000-116525000	Weak transcription	Brain Anterior Caudate	brain
2	chr5:116518200-116525200	Weak transcription	Brain Hippocampus Middle	brain
3	chr5:116519000-116519200	Enhancers	Brain Angular Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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