Variant report

Variant	rs13167829
Chromosome Location	chr5:116517090-116517091
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10068492	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10223221	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13154048	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13166199	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13168914	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13169066	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13183692	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13361759	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1389932	1.00[ASN][1000 genomes]
rs17392934	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17393052	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4920964	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6892426	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882752	chr5:116505127-116549323	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
2	nsv882753	chr5:116505127-116549669	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
3	nsv882754	chr5:116505127-116553503	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs13167829	AQPEP	cis	cerebellum	SCAN
rs13167829	SEMA6A	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116516200-116517200	Weak transcription	Brain Anterior Caudate	brain
2	chr5:116516600-116518200	Enhancers	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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