Variant report

Variant	rs13166199
Chromosome Location	chr5:116499224-116499225
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10068492	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10223221	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13154048	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13167829	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13168914	0.95[EUR][1000 genomes]
rs13169066	0.95[EUR][1000 genomes]
rs13169286	0.82[AMR][1000 genomes]
rs13183692	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13361759	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1389932	0.93[ASN][1000 genomes]
rs17141262	0.85[ASN][1000 genomes]
rs17392934	0.80[EUR][1000 genomes]
rs17393052	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4920964	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6892426	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752839	chr5:116461101-116504101	Enhancers Weak transcription Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116494400-116501200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:116498000-116500200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr5:116498000-116501800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr5:116498000-116502200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr5:116498200-116499400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr5:116498200-116499600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr5:116498200-116500200	Weak transcription	Brain Hippocampus Middle	brain
8	chr5:116498400-116500800	Weak transcription	Brain Substantia Nigra	brain
9	chr5:116499200-116499400	Enhancers	Fetal Kidney	kidney
10	chr5:116499200-116499800	Enhancers	Brain Anterior Caudate	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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