Variant report

Variant	rs17393052
Chromosome Location	chr5:116537817-116537818
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10065856	0.86[ASN][1000 genomes]
rs10068492	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10223221	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13154048	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13166199	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13167829	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13168914	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13169066	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13183692	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13361759	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17392934	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34864278	0.84[ASN][1000 genomes]
rs4920964	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882752	chr5:116505127-116549323	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
2	nsv882753	chr5:116505127-116549669	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
3	nsv882754	chr5:116505127-116553503	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
4	nsv1015741	chr5:116525936-116665270	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116536000-116538000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:116536600-116538000	Enhancers	Fetal Kidney	kidney
3	chr5:116537200-116540400	Weak transcription	Brain Substantia Nigra	brain
4	chr5:116537200-116540600	Weak transcription	Fetal Muscle Leg	muscle
5	chr5:116537400-116541000	Weak transcription	Fetal Lung	lung
6	chr5:116537600-116538000	Weak transcription	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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