Variant report

Variant	rs13163160
Chromosome Location	chr5:116493677-116493678
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10068492	0.81[EUR][1000 genomes]
rs13168914	1.00[ASN][1000 genomes]
rs13169066	1.00[ASN][1000 genomes]
rs13169286	0.89[ASN][1000 genomes]
rs28509225	1.00[ASN][1000 genomes]
rs4920964	0.82[EUR][1000 genomes]
rs7711251	1.00[ASN][1000 genomes]
rs7735944	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752839	chr5:116461101-116504101	Enhancers Weak transcription Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs13163160	AQPEP	cis	cerebellum	SCAN
rs13163160	SEMA6A	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:116485600-116497600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:116489000-116494200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr5:116493600-116494400	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr5:116493600-116495400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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