Variant report

Variant	rs11956809
Chromosome Location	chr5:97853143-97853144
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:97849489..97851225-chr5:97851628..97853211,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11957136	0.90[AFR][1000 genomes]
rs7723215	0.80[AFR][1000 genomes]
rs7727986	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018555	chr5:97719032-97873906	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv882412	chr5:97796120-97953719	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97845800-97853600	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr5:97846000-97857600	Weak transcription	Pancreas	Pancrea
3	chr5:97846000-97859000	Weak transcription	Gastric	stomach
4	chr5:97846600-97853400	Weak transcription	Brain Substantia Nigra	brain
5	chr5:97846800-97853400	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr5:97847200-97853600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr5:97849600-97853200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr5:97849600-97853400	Weak transcription	Fetal Intestine Small	intestine
9	chr5:97849600-97853400	Weak transcription	Small Intestine	intestine
10	chr5:97849600-97853600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr5:97849600-97853600	Weak transcription	Brain Germinal Matrix	brain
12	chr5:97849600-97853600	Weak transcription	Stomach Mucosa	stomach
13	chr5:97850200-97853200	Weak transcription	Fetal Intestine Large	intestine
14	chr5:97850200-97853400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr5:97850400-97853200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr5:97850400-97853400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr5:97850400-97853400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr5:97850400-97853600	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr5:97850600-97855400	Weak transcription	HSMM	muscle
20	chr5:97850800-97853200	Weak transcription	Fetal Muscle Leg	muscle
21	chr5:97851600-97853600	Weak transcription	NHDF-Ad	bronchial
22	chr5:97852600-97854400	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr5:97852600-97854600	Enhancers	Duodenum Mucosa	Duodenum
24	chr5:97852800-97857000	Weak transcription	Sigmoid Colon	Sigmoid Colon

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