The 2.0 version of rSNPBase

Variant report

Variant rs11957137
Chromosome Location chr5:80582119-80582120
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:39 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:80566200-80587800 Weak transcription Ovary ovary
2 chr5:80566400-80587600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
3 chr5:80566800-80587600 Weak transcription Right Ventricle heart
4 chr5:80568000-80585600 Weak transcription Skeletal Muscle Male skeletal muscle
5 chr5:80570400-80587200 Weak transcription Primary B cells from cord blood blood
6 chr5:80571600-80583000 Weak transcription Primary T helper cells fromperipheralblood blood
7 chr5:80572000-80595200 Weak transcription Rectal Mucosa Donor 29 rectum
8 chr5:80573800-80587400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
9 chr5:80574600-80585600 Weak transcription Dnd41 blood
10 chr5:80577200-80586200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
11 chr5:80578000-80586800 Weak transcription Skeletal Muscle Female skeletal muscle
12 chr5:80578200-80582400 Weak transcription ES-WA7 Cell Line embryonic stem cell
13 chr5:80578200-80585200 Weak transcription Fetal Intestine Large intestine
14 chr5:80578200-80585600 Weak transcription Left Ventricle heart
15 chr5:80578800-80586600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
16 chr5:80578800-80595200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
17 chr5:80579000-80586800 Weak transcription Psoas Muscle Psoas
18 chr5:80579200-80582600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
19 chr5:80579400-80583000 Weak transcription Primary T cells fromperipheralblood blood
20 chr5:80579400-80583800 Weak transcription Brain Hippocampus Middle brain
21 chr5:80579800-80587400 Weak transcription Fetal Lung lung
22 chr5:80579800-80587600 Weak transcription Liver Liver
23 chr5:80579800-80589000 Weak transcription Fetal Heart heart
24 chr5:80580000-80582200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
25 chr5:80580000-80586800 Weak transcription Primary hematopoietic stem cells short term culture blood
26 chr5:80580000-80587000 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
27 chr5:80580000-80587600 Weak transcription Breast Myoepithelial Primary Cells Breast
28 chr5:80580200-80582200 Weak transcription HepG2 liver
29 chr5:80580200-80586600 Weak transcription Primary hematopoietic stem cells blood
30 chr5:80580600-80582400 Weak transcription Sigmoid Colon Sigmoid Colon
31 chr5:80580800-80582200 Enhancers NHEK skin
32 chr5:80580800-80588000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
33 chr5:80581000-80587800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
34 chr5:80581200-80587600 Weak transcription Primary T cells from cord blood blood
35 chr5:80581400-80583400 Weak transcription Duodenum Smooth Muscle Duodenum
36 chr5:80581600-80587200 Weak transcription Fetal Kidney kidney
37 chr5:80581600-80595800 Weak transcription Small Intestine intestine
38 chr5:80581800-80588000 Weak transcription Primary T helper cells PMA-I stimulated --
39 chr5:80582000-80585200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin

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Last update: Aug 31, 2015