Variant report

Variant	rs11958789
Chromosome Location	chr5:80493714-80493715
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2291941	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs59719994	0.86[AFR][1000 genomes]
rs73768034	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73768037	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs871701	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024844	chr5:79862428-80860430	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:80464200-80528400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr5:80465200-80528200	Weak transcription	Ovary	ovary
3	chr5:80466000-80512600	Weak transcription	Gastric	stomach
4	chr5:80483600-80494200	Weak transcription	Right Atrium	heart
5	chr5:80484200-80497600	Weak transcription	Brain Substantia Nigra	brain
6	chr5:80485200-80496400	Weak transcription	Primary T cells from cord blood	blood
7	chr5:80485200-80516200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr5:80485400-80496600	Weak transcription	HepG2	liver
9	chr5:80488600-80495000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr5:80491000-80496600	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr5:80491000-80497400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr5:80491000-80497400	Weak transcription	Brain Hippocampus Middle	brain
13	chr5:80491000-80497800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr5:80491000-80499600	Weak transcription	Fetal Intestine Small	intestine
15	chr5:80491000-80502000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr5:80491000-80505600	Weak transcription	Brain Cingulate Gyrus	brain
17	chr5:80491000-80508600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr5:80491000-80520200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr5:80491000-80528400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr5:80491200-80496600	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr5:80491200-80496600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr5:80491200-80497200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr5:80491200-80497600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr5:80491200-80504600	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr5:80491200-80505600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr5:80491200-80530000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr5:80491400-80496800	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr5:80491400-80497000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr5:80491400-80497200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr5:80491400-80505400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr5:80491400-80528400	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr5:80491600-80500800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr5:80491600-80505400	Weak transcription	NHLF	lung
34	chr5:80491600-80505800	Weak transcription	Brain Angular Gyrus	brain
35	chr5:80491800-80494800	Weak transcription	Psoas Muscle	Psoas
36	chr5:80491800-80495000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr5:80491800-80497400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr5:80491800-80497600	Weak transcription	Adipose Nuclei	Adipose
39	chr5:80491800-80504800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr5:80491800-80505000	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr5:80492000-80510800	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr5:80492000-80528600	Weak transcription	Left Ventricle	heart

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