Variant report

Variant	rs73768034
Chromosome Location	chr5:80489228-80489229
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11958789	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59719994	0.89[AFR][1000 genomes]
rs73768037	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024844	chr5:79862428-80860430	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:80463200-80490800	Weak transcription	Brain Angular Gyrus	brain
2	chr5:80464200-80528400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr5:80465200-80528200	Weak transcription	Ovary	ovary
4	chr5:80466000-80512600	Weak transcription	Gastric	stomach
5	chr5:80466600-80490800	Weak transcription	Right Ventricle	heart
6	chr5:80475200-80490600	Weak transcription	Brain Anterior Caudate	brain
7	chr5:80476800-80490600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr5:80477000-80490400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr5:80477000-80490800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr5:80478400-80490800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr5:80482200-80490600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr5:80482800-80490800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr5:80483600-80490400	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr5:80483600-80494200	Weak transcription	Right Atrium	heart
15	chr5:80484000-80490800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr5:80484200-80490400	Weak transcription	Hela-S3	cervix
17	chr5:80484200-80490600	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr5:80484200-80490800	Weak transcription	Brain Hippocampus Middle	brain
19	chr5:80484200-80490800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr5:80484200-80490800	Weak transcription	Fetal Intestine Large	intestine
21	chr5:80484200-80490800	Weak transcription	Left Ventricle	heart
22	chr5:80484200-80497600	Weak transcription	Brain Substantia Nigra	brain
23	chr5:80484400-80490800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr5:80484600-80490400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr5:80484600-80490600	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr5:80485000-80490400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr5:80485000-80490600	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr5:80485200-80490400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr5:80485200-80490400	Weak transcription	Adipose Nuclei	Adipose
30	chr5:80485200-80490600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr5:80485200-80496400	Weak transcription	Primary T cells from cord blood	blood
32	chr5:80485200-80516200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr5:80485400-80496600	Weak transcription	HepG2	liver
34	chr5:80487000-80490400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr5:80487000-80490400	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr5:80487000-80491000	Weak transcription	Fetal Heart	heart
37	chr5:80487200-80490800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr5:80488400-80490400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr5:80488600-80495000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr5:80488800-80490200	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr5:80488800-80490400	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr5:80488800-80490400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr5:80489200-80489400	Enhancers	H1 Cell Line	embryonic stem cell

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