Variant report

Variant	rs871701
Chromosome Location	chr5:80545414-80545415
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr5:80545359-80545445	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:80543196..80546159-chr5:80550500..80552357,3	K562	blood:
2	chr5:80543196..80545536-chr5:80550500..80552357,2	K562	blood:

Variant related genes	Relation type
CKMT2	TF binding region
ENSG00000131730	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10041138	0.90[JPT][hapmap]
rs10052929	0.83[JPT][hapmap]
rs1039326	0.94[CHB][hapmap];0.91[JPT][hapmap];0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11958789	1.00[CEU][hapmap]
rs1566433	0.84[JPT][hapmap]
rs2291941	1.00[CEU][hapmap]
rs4502795	0.83[JPT][hapmap]
rs4704713	0.84[JPT][hapmap]
rs4704714	0.84[JPT][hapmap]
rs6863732	0.84[JPT][hapmap]
rs955948	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024844	chr5:79862428-80860430	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv598750	chr5:80503528-80599578	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:80527000-80546200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr5:80528000-80564400	Weak transcription	Hela-S3	cervix
3	chr5:80529400-80549400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr5:80529600-80545800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr5:80530000-80546400	Weak transcription	Primary hematopoietic stem cells	blood
6	chr5:80530800-80556400	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr5:80531200-80551200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr5:80531200-80556400	Weak transcription	Thymus	Thymus
9	chr5:80531200-80564200	Weak transcription	HepG2	liver
10	chr5:80531800-80555800	Weak transcription	Fetal Lung	lung
11	chr5:80532000-80548400	Weak transcription	Lung	lung
12	chr5:80532200-80548400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr5:80532200-80551000	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr5:80532200-80556800	Weak transcription	Dnd41	blood
15	chr5:80536200-80547800	Weak transcription	Spleen	Spleen
16	chr5:80536200-80548600	Weak transcription	Fetal Intestine Small	intestine
17	chr5:80538400-80551400	Weak transcription	GM12878-XiMat	blood
18	chr5:80539000-80555200	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr5:80539200-80548400	Weak transcription	Gastric	stomach
20	chr5:80541400-80549200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr5:80541800-80550600	Weak transcription	Fetal Intestine Large	intestine
22	chr5:80541800-80564400	Weak transcription	A549	lung
23	chr5:80542200-80545600	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr5:80542200-80557000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr5:80542400-80548600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr5:80542800-80546200	Weak transcription	Primary T cells from cord blood	blood
27	chr5:80542800-80546200	Weak transcription	Fetal Stomach	stomach
28	chr5:80542800-80548400	Weak transcription	Esophagus	oesophagus
29	chr5:80542800-80548800	Weak transcription	Fetal Muscle Trunk	muscle
30	chr5:80543000-80548400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr5:80543000-80554200	Weak transcription	Pancreas	Pancrea
32	chr5:80543400-80545800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr5:80543400-80546000	Weak transcription	Fetal Brain Female	brain
34	chr5:80543400-80547400	Weak transcription	Small Intestine	intestine
35	chr5:80543600-80546200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr5:80543600-80546200	Enhancers	Skeletal Muscle Male	skeletal muscle
37	chr5:80543600-80549000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr5:80543800-80565600	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr5:80544000-80546400	Weak transcription	Fetal Muscle Leg	muscle
40	chr5:80544000-80549200	Weak transcription	NHEK	skin
41	chr5:80544000-80549400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr5:80544000-80557000	Weak transcription	Duodenum Mucosa	Duodenum
43	chr5:80544000-80564200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr5:80544000-80564400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr5:80544200-80546000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr5:80544200-80547800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr5:80544200-80548000	Weak transcription	Adipose Nuclei	Adipose
48	chr5:80544200-80549200	Weak transcription	HMEC	breast
49	chr5:80544200-80549400	Weak transcription	HSMM	muscle
50	chr5:80544200-80549800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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