The 2.0 version of rSNPBase

Variant report

Variant rs11957406
Chromosome Location chr5:40683567-40683568
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:83 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:40678400-40683800 Active TSS HSMM muscle
2 chr5:40678400-40684600 Active TSS HSMMtube muscle
3 chr5:40678600-40684400 Active TSS Pancreatic Islets Pancreatic Islet
4 chr5:40678600-40685800 Active TSS Right Atrium heart
5 chr5:40679000-40685600 Active TSS Colon Smooth Muscle Colon
6 chr5:40679000-40689400 Transcr. at gene 5' and 3' Primary T helper 17 cells PMA-I stimulated --
7 chr5:40679200-40684000 Active TSS Small Intestine intestine
8 chr5:40679200-40684600 Active TSS Primary T killer memory cells from peripheral blood blood
9 chr5:40679200-40684800 Active TSS Primary T helper memory cells from peripheral blood 2 blood
10 chr5:40679200-40685000 Active TSS NHLF lung
11 chr5:40679400-40683600 Active TSS Primary T killer naive cells fromperipheralblood blood
12 chr5:40679400-40684400 Active TSS Primary T cells fromperipheralblood blood
13 chr5:40679400-40684400 Active TSS Primary T helper memory cells from peripheral blood 1 blood
14 chr5:40680000-40685000 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
15 chr5:40680200-40683800 Flanking Active TSS Primary neutrophils fromperipheralblood blood
16 chr5:40680200-40689600 Transcr. at gene 5' and 3' Primary T helper cells PMA-I stimulated --
17 chr5:40680400-40684000 Flanking Active TSS Primary B cells from cord blood blood
18 chr5:40680800-40685200 Weak transcription A549 lung
19 chr5:40680800-40690800 Transcr. at gene 5' and 3' Dnd41 blood
20 chr5:40681200-40683800 Active TSS Stomach Mucosa stomach
21 chr5:40681400-40684600 Transcr. at gene 5' and 3' Muscle Satellite Cultured Cells --
22 chr5:40681600-40684600 Active TSS Fetal Kidney kidney
23 chr5:40681600-40685200 Active TSS Fetal Thymus thymus
24 chr5:40681800-40684000 Active TSS hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
25 chr5:40681800-40685800 Active TSS Primary T helper naive cells from peripheral blood blood
26 chr5:40682000-40684000 Flanking Active TSS Primary mononuclear cells fromperipheralblood Blood
27 chr5:40682000-40684000 Active TSS Sigmoid Colon Sigmoid Colon
28 chr5:40682000-40684600 Active TSS Right Ventricle heart
29 chr5:40682000-40685200 Active TSS Rectal Mucosa Donor 31 rectum
30 chr5:40682000-40685600 Active TSS Stomach Smooth Muscle stomach
31 chr5:40682000-40685800 Active TSS Colonic Mucosa Colon
32 chr5:40682000-40687200 Flanking Active TSS Adipose Nuclei Adipose
33 chr5:40682200-40683800 Flanking Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
34 chr5:40682200-40683800 Bivalent/Poised TSS Skeletal Muscle Female skeletal muscle
35 chr5:40682200-40684000 Flanking Active TSS Primary T helper cells fromperipheralblood blood
36 chr5:40682200-40684000 Bivalent/Poised TSS Skeletal Muscle Male skeletal muscle
37 chr5:40682200-40684000 Active TSS GM12878-XiMat blood
38 chr5:40682200-40685400 Active TSS Duodenum Mucosa Duodenum
39 chr5:40682200-40686400 Active TSS Rectal Smooth Muscle rectum
40 chr5:40682400-40683800 Flanking Active TSS Primary T cells from cord blood blood
41 chr5:40682400-40683800 Active TSS Fetal Muscle Trunk muscle
42 chr5:40682400-40684000 Active TSS Pancreas Pancrea
43 chr5:40682400-40684600 Active TSS Fetal Intestine Small intestine
44 chr5:40682400-40684600 Active TSS Fetal Stomach stomach
45 chr5:40682400-40684800 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
46 chr5:40682400-40685200 Active TSS Duodenum Smooth Muscle Duodenum
47 chr5:40682400-40685400 Active TSS Fetal Muscle Leg muscle
48 chr5:40682400-40685800 Active TSS Primary T helper naive cells fromperipheralblood blood
49 chr5:40682400-40691400 Weak transcription Spleen Spleen
50 chr5:40682600-40683600 Active TSS Primary T cells effector/memory enriched fromperipheralblood blood

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Last update: Aug 31, 2015