Variant report

Variant	rs7714305
Chromosome Location	chr5:40641248-40641249
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10038367	0.81[AMR][1000 genomes]
rs10040364	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10043891	0.81[AMR][1000 genomes]
rs10044538	0.81[AMR][1000 genomes]
rs10053469	0.81[AMR][1000 genomes]
rs10055624	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10057182	0.81[AMR][1000 genomes]
rs10063818	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10063864	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10064394	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10065482	0.81[AMR][1000 genomes]
rs10065874	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10065894	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10068069	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10071117	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10071870	0.81[AMR][1000 genomes]
rs10073344	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10473206	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10473209	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10473211	0.81[AMR][1000 genomes]
rs10941521	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11744569	0.81[AMR][1000 genomes]
rs11744700	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11745462	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11745901	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11949581	0.81[AMR][1000 genomes]
rs11952914	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11955037	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12188666	0.81[AMR][1000 genomes]
rs12513529	0.81[AMR][1000 genomes]
rs1395082	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17238368	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28820606	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28862949	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4957333	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4957336	0.81[AMR][1000 genomes]
rs4957337	0.81[AMR][1000 genomes]
rs4957338	0.81[AMR][1000 genomes]
rs4957339	0.81[AMR][1000 genomes]
rs62356461	0.81[AMR][1000 genomes]
rs62358796	0.81[AMR][1000 genomes]
rs62358800	0.81[AMR][1000 genomes]
rs6860233	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6867169	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6879155	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6879329	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6892451	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72747928	0.81[AMR][1000 genomes]
rs72747930	0.81[AMR][1000 genomes]
rs7349788	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7726047	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7729332	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9292784	0.81[AMR][1000 genomes]
rs9292785	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880993	chr5:40521648-40682550	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	38 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7714305	RPL37	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:40640600-40641600	Enhancers	HMEC	breast
2	chr5:40640800-40642400	Enhancers	Dnd41	blood
3	chr5:40641000-40641400	Enhancers	Muscle Satellite Cultured Cells	--
4	chr5:40641200-40641400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:40641200-40641600	Enhancers	A549	lung
6	chr5:40641200-40641600	Enhancers	HUVEC	blood vessel
7	chr5:40641200-40641600	Enhancers	NH-A	brain
8	chr5:40641200-40641600	Enhancers	NHEK	skin
9	chr5:40641200-40642000	Enhancers	Primary T cells from cord blood	blood
10	chr5:40641200-40642400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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