Variant report

Variant	rs6892451
Chromosome Location	chr5:40645596-40645597
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10035697	0.80[ASN][1000 genomes]
rs10038251	0.80[ASN][1000 genomes]
rs10040364	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10043891	0.80[ASN][1000 genomes]
rs10044538	0.80[ASN][1000 genomes]
rs10053469	0.80[ASN][1000 genomes]
rs10055624	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10056173	0.80[ASN][1000 genomes]
rs10057182	0.80[ASN][1000 genomes]
rs10063818	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10063864	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10064394	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10065482	0.80[ASN][1000 genomes]
rs10065874	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10065894	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10068069	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10071117	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10071870	0.80[ASN][1000 genomes]
rs10073344	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10473206	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10473209	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10473210	0.80[ASN][1000 genomes]
rs10473211	0.80[ASN][1000 genomes]
rs10941521	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10941522	0.80[ASN][1000 genomes]
rs11744569	0.80[ASN][1000 genomes]
rs11744700	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11745462	0.83[AMR][1000 genomes]
rs11745901	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11949581	0.80[ASN][1000 genomes]
rs11952914	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11955037	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12188666	0.80[ASN][1000 genomes]
rs12513529	0.80[ASN][1000 genomes]
rs1395082	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1553579	0.80[ASN][1000 genomes]
rs17238368	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28820606	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28862949	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35693860	0.80[ASN][1000 genomes]
rs4957333	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4957334	0.80[ASN][1000 genomes]
rs4957336	0.80[ASN][1000 genomes]
rs4957337	0.80[ASN][1000 genomes]
rs4957338	0.80[ASN][1000 genomes]
rs4957339	0.80[ASN][1000 genomes]
rs62356461	0.80[ASN][1000 genomes]
rs62358796	0.80[ASN][1000 genomes]
rs6860233	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6867169	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6879155	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6879329	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72747928	0.80[ASN][1000 genomes]
rs72747930	0.80[ASN][1000 genomes]
rs7349788	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7714305	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7726047	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7729332	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880993	chr5:40521648-40682550	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	38 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6892451	RPL37	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:40641600-40646000	Weak transcription	HUVEC	blood vessel
2	chr5:40641800-40648400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr5:40642400-40646000	Weak transcription	Hela-S3	cervix
4	chr5:40644000-40654600	Weak transcription	Small Intestine	intestine
5	chr5:40645200-40648200	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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