Variant report

Variant	rs11745462
Chromosome Location	chr5:40651147-40651148
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10040364	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10055624	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10063818	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10063864	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10064394	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10065874	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10065894	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10068069	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10071117	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10073344	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10473206	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10473209	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10473216	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10941521	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11744700	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11745901	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11952914	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11955037	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1395082	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1553578	0.80[AFR][1000 genomes]
rs17238368	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28820606	0.81[EUR][1000 genomes]
rs28862949	0.82[EUR][1000 genomes]
rs4957333	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6860233	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6867169	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6879155	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6879329	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6892451	0.83[AMR][1000 genomes]
rs7349788	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7714305	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7726047	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7729332	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880993	chr5:40521648-40682550	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	38 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11745462	RPL37	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:40644000-40654600	Weak transcription	Small Intestine	intestine
2	chr5:40646400-40652400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr5:40646600-40652400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr5:40647200-40652400	Weak transcription	Duodenum Mucosa	Duodenum
5	chr5:40648200-40653200	Enhancers	Primary T cells from cord blood	blood
6	chr5:40648400-40651200	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr5:40648400-40651600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr5:40648400-40652400	Enhancers	Dnd41	blood
9	chr5:40648600-40651800	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr5:40648800-40652600	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr5:40649200-40651200	Enhancers	Thymus	Thymus
12	chr5:40649800-40652600	Weak transcription	Primary hematopoietic stem cells	blood
13	chr5:40650200-40652000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr5:40650200-40652400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr5:40650200-40652400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr5:40650200-40652600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr5:40650200-40652800	Weak transcription	Primary B cells from cord blood	blood
18	chr5:40650200-40652800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr5:40650400-40652400	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr5:40650400-40652400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr5:40650400-40652600	Weak transcription	Primary B cells from peripheral blood	blood
22	chr5:40650400-40652600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr5:40650400-40652800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
24	chr5:40650400-40653400	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr5:40650400-40654400	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr5:40650600-40652200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr5:40650600-40652400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr5:40650800-40652200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr5:40650800-40652200	Weak transcription	Fetal Thymus	thymus
30	chr5:40650800-40652600	Enhancers	Primary T helper cells PMA-I stimulated	--
31	chr5:40651000-40652000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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