Variant report

Variant	rs6879329
Chromosome Location	chr5:40642157-40642158
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 95 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs10035235	0.87[CHD][hapmap];0.94[JPT][hapmap]
rs10035697	0.85[ASN][1000 genomes]
rs10038251	0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs10038367	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10040364	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10043839	0.84[ASN][1000 genomes]
rs10043891	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10044538	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10053469	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10053664	0.94[JPT][hapmap]
rs10055624	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10056173	0.85[ASN][1000 genomes]
rs10057182	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10062565	0.84[JPT][hapmap]
rs10063818	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10063864	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10064394	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10065482	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10065874	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10065894	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10066459	0.93[ASW][hapmap];0.92[CEU][hapmap];0.82[CHB][hapmap];0.86[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.83[MKK][hapmap];0.91[TSI][hapmap];0.92[YRI][hapmap]
rs10068069	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10069737	0.87[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap]
rs10071117	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10071870	1.00[CEU][hapmap];0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10073344	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1015027	0.87[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap]
rs10473206	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10473209	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10473210	0.85[ASN][1000 genomes]
rs10473211	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10473214	0.82[ASN][1000 genomes]
rs10941521	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10941522	0.85[ASN][1000 genomes]
rs10941525	0.87[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap]
rs11744569	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11744700	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11745462	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11745901	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11747210	0.81[CHB][hapmap];0.87[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap]
rs11949581	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11952914	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11955037	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11957406	0.80[CEU][hapmap]
rs12188666	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12513529	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12517210	0.87[CHD][hapmap];0.88[GIH][hapmap];0.94[JPT][hapmap]
rs12520058	1.00[JPT][hapmap];0.84[YRI][hapmap]
rs12523329	0.82[CHD][hapmap];1.00[JPT][hapmap]
rs1363847	1.00[JPT][hapmap];0.82[YRI][hapmap]
rs1395082	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1553578	0.82[ASN][1000 genomes]
rs1553579	0.85[ASN][1000 genomes]
rs17238368	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2270625	0.84[JPT][hapmap]
rs2291782	0.84[JPT][hapmap]
rs28820606	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28862949	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35693860	0.85[ASN][1000 genomes]
rs3792827	1.00[JPT][hapmap];0.84[YRI][hapmap]
rs3805489	0.94[JPT][hapmap]
rs3805490	0.87[CHD][hapmap];0.94[JPT][hapmap]
rs3805492	0.87[CHD][hapmap];0.94[JPT][hapmap]
rs3805494	0.87[CHD][hapmap];0.94[JPT][hapmap]
rs3805499	1.00[JPT][hapmap]
rs3816959	0.84[JPT][hapmap]
rs4599576	0.81[ASN][1000 genomes]
rs4957333	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4957334	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs4957336	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4957337	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4957338	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4957339	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs62356461	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs62358056	0.81[ASN][1000 genomes]
rs62358796	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs62358800	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6860233	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6867169	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6868112	0.82[GIH][hapmap];0.84[JPT][hapmap]
rs6879155	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6892451	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72747928	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs72747930	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs72747940	0.81[ASN][1000 genomes]
rs7349788	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7714305	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7719692	1.00[JPT][hapmap];0.84[YRI][hapmap]
rs7721093	1.00[JPT][hapmap];0.84[YRI][hapmap]
rs7725810	0.84[JPT][hapmap]
rs7726047	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7729332	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9292784	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9292785	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880993	chr5:40521648-40682550	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	38 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs6879329	FBLL1	trans	cerebellum	SCAN
rs6879329	RPL37	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:40640800-40642400	Enhancers	Dnd41	blood
2	chr5:40641200-40642400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:40641600-40642200	Weak transcription	HMEC	breast
4	chr5:40641600-40646000	Weak transcription	HUVEC	blood vessel
5	chr5:40641800-40642200	Weak transcription	Hela-S3	cervix
6	chr5:40641800-40648400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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