Variant report

Variant	rs11955037
Chromosome Location	chr5:40628248-40628249
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 90 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs10035235	0.94[JPT][hapmap]
rs10035697	0.85[ASN][1000 genomes]
rs10038251	0.85[ASN][1000 genomes]
rs10038367	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10040364	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10043839	0.84[ASN][1000 genomes]
rs10043891	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10044538	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10053469	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10053664	0.95[JPT][hapmap]
rs10055624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10056173	0.85[ASN][1000 genomes]
rs10057182	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10063818	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10063864	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10064394	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10065482	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10065874	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10065894	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10066459	0.92[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10068069	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10069737	1.00[JPT][hapmap]
rs10071117	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10071870	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10073344	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1015027	1.00[JPT][hapmap]
rs10473206	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10473209	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10473210	0.85[ASN][1000 genomes]
rs10473211	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10473214	0.82[ASN][1000 genomes]
rs10941521	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10941522	0.85[ASN][1000 genomes]
rs10941525	1.00[JPT][hapmap];0.92[YRI][hapmap]
rs11744569	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11744700	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11745462	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11745901	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11747210	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs11949581	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11952914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12188666	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12513529	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12517210	0.94[JPT][hapmap]
rs12520058	1.00[JPT][hapmap];0.93[YRI][hapmap]
rs12523329	1.00[JPT][hapmap]
rs1363847	1.00[JPT][hapmap];0.91[YRI][hapmap]
rs1395082	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1553578	0.84[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs1553579	0.85[ASN][1000 genomes]
rs17238368	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28820606	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28862949	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35693860	0.85[ASN][1000 genomes]
rs3792827	1.00[JPT][hapmap];0.92[YRI][hapmap]
rs3805489	0.94[JPT][hapmap]
rs3805490	0.94[JPT][hapmap]
rs3805492	0.94[JPT][hapmap]
rs3805494	0.94[JPT][hapmap]
rs3805499	1.00[JPT][hapmap]
rs4599576	0.81[ASN][1000 genomes]
rs4957333	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4957334	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.85[ASN][1000 genomes]
rs4957336	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4957337	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4957338	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4957339	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs62356461	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs62358056	0.81[ASN][1000 genomes]
rs62358796	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs62358800	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6860233	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6867169	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6868112	0.84[JPT][hapmap]
rs6879155	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6879329	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6892451	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72747928	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs72747930	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs72747940	0.81[ASN][1000 genomes]
rs7349788	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7714305	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7719692	1.00[JPT][hapmap];0.93[YRI][hapmap]
rs7721093	1.00[JPT][hapmap];0.93[YRI][hapmap]
rs7725810	0.84[JPT][hapmap]
rs7726047	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7729332	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9292784	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9292785	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880993	chr5:40521648-40682550	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	38 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11955037	RPL37	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:40620800-40634200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr5:40623800-40628600	Weak transcription	Small Intestine	intestine
3	chr5:40624800-40634200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr5:40625000-40630200	Weak transcription	Dnd41	blood
5	chr5:40625600-40628400	Weak transcription	Primary T cells from cord blood	blood
6	chr5:40627200-40628800	Enhancers	HSMMtube	muscle
7	chr5:40627400-40628600	Enhancers	Osteobl	bone
8	chr5:40627400-40628800	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr5:40627400-40629200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr5:40627400-40629600	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr5:40627600-40628400	Enhancers	Muscle Satellite Cultured Cells	--
12	chr5:40627600-40628400	Enhancers	HSMM	muscle
13	chr5:40627600-40628800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr5:40627600-40628800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr5:40627800-40628800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr5:40627800-40628800	Enhancers	NHDF-Ad	bronchial
17	chr5:40627800-40629200	Enhancers	Primary hematopoietic stem cells	blood
18	chr5:40628000-40628400	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr5:40628000-40629200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
20	chr5:40628000-40629600	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr5:40628200-40628400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr5:40628200-40628400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
23	chr5:40628200-40628800	Enhancers	Primary B cells from peripheral blood	blood
24	chr5:40628200-40629000	Enhancers	Adipose Nuclei	Adipose
25	chr5:40628200-40629200	Enhancers	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links