Variant report

Variant	rs10941525
Chromosome Location	chr5:40735926-40735927
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:39949128..39949631-chr5:40735903..40736859,2	K562	blood:
2	chr5:40731258..40733154-chr5:40734945..40737187,4	K562	blood:
3	chr5:39713337..39715407-chr5:40733995..40736631,2	MCF-7	breast:
4	chr5:40731258..40732894-chr5:40735396..40737187,2	K562	blood:
5	chr5:40685575..40687656-chr5:40735781..40737891,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10035235	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.80[MEX][hapmap]
rs10042459	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10053469	0.82[AFR][1000 genomes]
rs10053664	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs10062565	0.84[JPT][hapmap]
rs10066459	0.85[ASW][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.90[MKK][hapmap];0.82[TSI][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes]
rs10069737	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.96[MEX][hapmap];0.94[MKK][hapmap];0.95[TSI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10074117	0.83[AFR][1000 genomes]
rs1015027	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10473214	0.82[AFR][1000 genomes]
rs11747210	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap]
rs11949581	0.82[AFR][1000 genomes]
rs12517210	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap]
rs12518018	0.89[ASN][1000 genomes]
rs12520058	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12523329	1.00[CHB][hapmap];0.95[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap]
rs1363847	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2194204	0.91[ASN][1000 genomes]
rs2270625	0.84[JPT][hapmap]
rs2291782	0.84[JPT][hapmap]
rs3792827	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs3805489	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs3805490	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.80[MEX][hapmap]
rs3805492	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap]
rs3805494	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap]
rs3805498	0.97[ASN][1000 genomes]
rs3805499	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs3816959	0.84[JPT][hapmap]
rs4957334	1.00[JPT][hapmap];0.84[YRI][hapmap]
rs4957338	0.82[AFR][1000 genomes]
rs4957343	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4957347	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56752286	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62356468	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62356508	0.88[AFR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62358796	0.82[AFR][1000 genomes]
rs6868112	0.89[GIH][hapmap];0.84[JPT][hapmap];0.83[MEX][hapmap]
rs72747952	0.83[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs72747958	0.91[ASN][1000 genomes]
rs7717814	0.91[EUR][1000 genomes]
rs7719692	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7721093	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7725810	0.82[GIH][hapmap];0.84[JPT][hapmap]
rs9292784	0.82[AFR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10941525	OXCT1	cis	cerebellum	SCAN

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:40692400-40741200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr5:40709600-40745000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr5:40712800-40741200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr5:40713200-40740600	Weak transcription	Right Ventricle	heart
5	chr5:40714600-40739400	Weak transcription	GM12878-XiMat	blood
6	chr5:40715400-40739400	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr5:40721200-40739600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr5:40721400-40739600	Weak transcription	Placenta	Placenta
9	chr5:40721400-40741400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr5:40721600-40736000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr5:40721800-40738800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr5:40721800-40739000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr5:40721800-40740600	Weak transcription	Fetal Brain Male	brain
14	chr5:40722200-40739400	Weak transcription	Primary B cells from cord blood	blood
15	chr5:40722800-40739200	Weak transcription	Fetal Brain Female	brain
16	chr5:40722800-40741400	Weak transcription	Aorta	Aorta
17	chr5:40722800-40755200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr5:40723000-40741600	Weak transcription	Lung	lung
19	chr5:40724200-40740600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr5:40724400-40737000	Weak transcription	Brain Germinal Matrix	brain
21	chr5:40724400-40738800	Weak transcription	A549	lung
22	chr5:40724600-40740800	Weak transcription	Fetal Muscle Trunk	muscle
23	chr5:40724800-40740600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr5:40728200-40739000	Weak transcription	Primary B cells from peripheral blood	blood
25	chr5:40728200-40745600	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr5:40728400-40739400	Weak transcription	Left Ventricle	heart
27	chr5:40728600-40739400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr5:40728600-40739400	Weak transcription	Thymus	Thymus
29	chr5:40728600-40740400	Weak transcription	Fetal Thymus	thymus
30	chr5:40728600-40741200	Weak transcription	Fetal Stomach	stomach
31	chr5:40728800-40741200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr5:40729000-40741400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr5:40729200-40738800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr5:40729200-40739400	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr5:40729200-40741400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr5:40729400-40738800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr5:40730400-40739600	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr5:40731200-40736600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr5:40732400-40736600	Enhancers	Rectal Mucosa Donor 31	rectum
40	chr5:40732600-40736400	Enhancers	Fetal Intestine Large	intestine
41	chr5:40732800-40736400	Enhancers	Primary hematopoietic stem cells	blood
42	chr5:40733200-40736200	Enhancers	Stomach Mucosa	stomach
43	chr5:40733400-40736600	Enhancers	Liver	Liver
44	chr5:40733400-40736600	Enhancers	Duodenum Mucosa	Duodenum
45	chr5:40733600-40736000	Enhancers	Ovary	ovary
46	chr5:40733600-40736000	Enhancers	Sigmoid Colon	Sigmoid Colon
47	chr5:40733600-40736400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr5:40733600-40736400	Enhancers	Brain Angular Gyrus	brain
49	chr5:40733600-40736400	Enhancers	Brain Substantia Nigra	brain
50	chr5:40733600-40736400	Enhancers	Colon Smooth Muscle	Colon

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