Variant report

Variant	rs62356508
Chromosome Location	chr5:40722262-40722263
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10042459	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10069737	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10074117	0.80[AFR][1000 genomes]
rs1015027	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10941525	0.88[AFR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12518018	0.91[ASN][1000 genomes]
rs1363847	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2194204	0.86[ASN][1000 genomes]
rs3805498	0.83[ASN][1000 genomes]
rs3805499	0.83[ASN][1000 genomes]
rs4957343	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4957347	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56752286	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62356468	0.84[EUR][1000 genomes]
rs72747952	0.85[ASN][1000 genomes]
rs72747958	0.86[ASN][1000 genomes]
rs7717814	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3432300	chr5:40698244-40726882	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs62356508	RPL37	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:40692400-40741200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr5:40692800-40733800	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr5:40692800-40735000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:40693600-40727400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:40695200-40727000	Weak transcription	HSMM	muscle
6	chr5:40705600-40727000	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr5:40709600-40745000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr5:40712800-40741200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr5:40713200-40740600	Weak transcription	Right Ventricle	heart
10	chr5:40713600-40734800	Weak transcription	Hela-S3	cervix
11	chr5:40714400-40727400	Weak transcription	Brain Anterior Caudate	brain
12	chr5:40714600-40739400	Weak transcription	GM12878-XiMat	blood
13	chr5:40715400-40733600	Weak transcription	Fetal Heart	heart
14	chr5:40715400-40739400	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr5:40715600-40734800	Weak transcription	NHEK	skin
16	chr5:40716400-40733200	Weak transcription	HUVEC	blood vessel
17	chr5:40716400-40733600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr5:40716400-40733800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr5:40716800-40724000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr5:40717000-40727400	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr5:40717600-40733600	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr5:40717800-40724000	Weak transcription	A549	lung
23	chr5:40717800-40727400	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr5:40717800-40733600	Weak transcription	Brain Substantia Nigra	brain
25	chr5:40717800-40733600	Weak transcription	NHDF-Ad	bronchial
26	chr5:40717800-40734400	Weak transcription	NH-A	brain
27	chr5:40718000-40724000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr5:40718000-40727000	Weak transcription	Osteobl	bone
29	chr5:40718000-40727400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr5:40718600-40722600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr5:40719400-40722800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr5:40720000-40727400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr5:40720000-40733600	Weak transcription	Fetal Kidney	kidney
34	chr5:40720400-40722400	Strong transcription	Primary T cells from cord blood	blood
35	chr5:40720400-40723600	Weak transcription	K562	blood
36	chr5:40720600-40722400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr5:40720600-40722800	ZNF genes & repeats	Fetal Muscle Leg	muscle
38	chr5:40720800-40722800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr5:40720800-40722800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
40	chr5:40720800-40722800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr5:40720800-40722800	Strong transcription	Aorta	Aorta
42	chr5:40720800-40722800	ZNF genes & repeats	Fetal Brain Female	brain
43	chr5:40720800-40724600	Strong transcription	Primary neutrophils fromperipheralblood	blood
44	chr5:40720800-40724600	ZNF genes & repeats	Dnd41	blood
45	chr5:40720800-40724800	ZNF genes & repeats	Fetal Intestine Large	intestine
46	chr5:40720800-40724800	ZNF genes & repeats	Fetal Intestine Small	intestine
47	chr5:40721000-40722400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr5:40721000-40722400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
49	chr5:40721000-40722400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
50	chr5:40721000-40722400	Strong transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links