Variant report

Variant	rs1015027
Chromosome Location	chr5:40734626-40734627
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:39713337..39715407-chr5:40733995..40736631,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10035235	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.80[MEX][hapmap]
rs10042459	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10053664	0.88[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs10062565	0.84[JPT][hapmap]
rs10066459	0.85[ASW][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.92[MKK][hapmap];0.82[TSI][hapmap]
rs10069737	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.96[MEX][hapmap];0.98[MKK][hapmap];0.95[TSI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10941525	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11747210	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap]
rs12517210	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap]
rs12518018	0.87[ASN][1000 genomes]
rs12520058	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12523329	1.00[CHB][hapmap];0.95[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap]
rs1363847	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2194204	0.90[ASN][1000 genomes]
rs2270625	0.84[JPT][hapmap]
rs2291782	0.84[JPT][hapmap]
rs3792827	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3805489	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs3805490	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.80[MEX][hapmap]
rs3805492	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap]
rs3805494	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap]
rs3805498	0.95[ASN][1000 genomes]
rs3805499	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs3816959	0.84[JPT][hapmap]
rs4957334	1.00[JPT][hapmap]
rs4957343	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4957347	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56752286	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62356468	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62356508	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6868112	0.89[GIH][hapmap];0.84[JPT][hapmap];0.83[MEX][hapmap]
rs72747952	0.88[ASN][1000 genomes]
rs72747958	0.90[ASN][1000 genomes]
rs7717814	0.91[EUR][1000 genomes]
rs7719692	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7721093	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7725810	0.82[GIH][hapmap];0.84[JPT][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1015027	RPL37	Cis_1M	lymphoblastoid	RTeQTL
rs1015027	OXCT1	cis	cerebellum	SCAN

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:40692400-40741200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr5:40692800-40735000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr5:40709600-40745000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr5:40712800-40741200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr5:40713200-40740600	Weak transcription	Right Ventricle	heart
6	chr5:40713600-40734800	Weak transcription	Hela-S3	cervix
7	chr5:40714600-40739400	Weak transcription	GM12878-XiMat	blood
8	chr5:40715400-40739400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr5:40715600-40734800	Weak transcription	NHEK	skin
10	chr5:40721200-40739600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr5:40721400-40735000	Weak transcription	Small Intestine	intestine
12	chr5:40721400-40739600	Weak transcription	Placenta	Placenta
13	chr5:40721400-40741400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr5:40721600-40736000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr5:40721800-40735800	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr5:40721800-40738800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr5:40721800-40739000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr5:40721800-40740600	Weak transcription	Fetal Brain Male	brain
19	chr5:40722200-40739400	Weak transcription	Primary B cells from cord blood	blood
20	chr5:40722800-40735000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr5:40722800-40735000	Weak transcription	Esophagus	oesophagus
22	chr5:40722800-40735000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr5:40722800-40739200	Weak transcription	Fetal Brain Female	brain
24	chr5:40722800-40741400	Weak transcription	Aorta	Aorta
25	chr5:40722800-40755200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr5:40723000-40741600	Weak transcription	Lung	lung
27	chr5:40723800-40735000	Weak transcription	K562	blood
28	chr5:40724200-40740600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr5:40724400-40737000	Weak transcription	Brain Germinal Matrix	brain
30	chr5:40724400-40738800	Weak transcription	A549	lung
31	chr5:40724600-40740800	Weak transcription	Fetal Muscle Trunk	muscle
32	chr5:40724800-40740600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr5:40728000-40735000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr5:40728000-40735000	Weak transcription	Osteobl	bone
35	chr5:40728000-40735600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr5:40728200-40739000	Weak transcription	Primary B cells from peripheral blood	blood
37	chr5:40728200-40745600	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr5:40728400-40739400	Weak transcription	Left Ventricle	heart
39	chr5:40728600-40739400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr5:40728600-40739400	Weak transcription	Thymus	Thymus
41	chr5:40728600-40740400	Weak transcription	Fetal Thymus	thymus
42	chr5:40728600-40741200	Weak transcription	Fetal Stomach	stomach
43	chr5:40728800-40741200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr5:40729000-40741400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr5:40729200-40734800	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr5:40729200-40738800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr5:40729200-40739400	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr5:40729200-40741400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr5:40729400-40738800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr5:40730400-40739600	Weak transcription	Primary T helper cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links