Variant report

Variant	rs10042459
Chromosome Location	chr5:40707301-40707302
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10043839	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs10053469	0.85[AFR][1000 genomes]
rs10056173	0.82[AFR][1000 genomes]
rs10066459	0.88[AFR][1000 genomes]
rs10069737	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10074117	0.86[AFR][1000 genomes]
rs1015027	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10473210	0.82[AFR][1000 genomes]
rs10473211	0.82[AFR][1000 genomes]
rs10473214	0.85[AFR][1000 genomes]
rs10941525	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11949581	0.85[AFR][1000 genomes]
rs12518018	0.92[ASN][1000 genomes]
rs1363847	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17835256	0.84[ASN][1000 genomes]
rs2194204	0.93[ASN][1000 genomes]
rs3805498	0.88[ASN][1000 genomes]
rs3805499	0.88[ASN][1000 genomes]
rs4957338	0.85[AFR][1000 genomes]
rs4957343	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4957347	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56752286	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62356460	0.82[AFR][1000 genomes]
rs62356468	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62356508	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62358796	0.85[AFR][1000 genomes]
rs72747952	0.86[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs72747958	0.93[ASN][1000 genomes]
rs7717814	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9292784	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880539	chr5:40662257-40713645	Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
2	esv3432300	chr5:40698244-40726882	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10042459	RPL37	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:40688800-40718600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr5:40692400-40741200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr5:40692800-40721000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr5:40692800-40733800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr5:40692800-40735000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr5:40693600-40727400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr5:40694800-40721000	Weak transcription	Thymus	Thymus
8	chr5:40695200-40715800	Weak transcription	Primary B cells from cord blood	blood
9	chr5:40695200-40727000	Weak transcription	HSMM	muscle
10	chr5:40699000-40720800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr5:40700800-40712800	Weak transcription	Gastric	stomach
12	chr5:40700800-40720600	Weak transcription	Left Ventricle	heart
13	chr5:40700800-40720800	Weak transcription	Spleen	Spleen
14	chr5:40700800-40722200	Weak transcription	Lung	lung
15	chr5:40701000-40720800	Weak transcription	Aorta	Aorta
16	chr5:40701000-40722200	Weak transcription	Esophagus	oesophagus
17	chr5:40701400-40711400	Weak transcription	Fetal Intestine Large	intestine
18	chr5:40702400-40715800	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr5:40702600-40711800	Weak transcription	Fetal Kidney	kidney
20	chr5:40702800-40715200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr5:40704200-40714800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr5:40705600-40727000	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr5:40706200-40715800	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr5:40706400-40711400	Weak transcription	Primary T cells from cord blood	blood
25	chr5:40706400-40717600	Weak transcription	Adipose Nuclei	Adipose
26	chr5:40706400-40717600	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr5:40706400-40719800	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr5:40706400-40720600	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr5:40706400-40720800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr5:40706400-40721000	Weak transcription	Stomach Smooth Muscle	stomach
31	chr5:40707000-40720600	Weak transcription	Fetal Muscle Leg	muscle
32	chr5:40707200-40707800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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