Variant report

Variant	rs17835256
Chromosome Location	chr5:40690661-40690662
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10035697	0.89[ASN][1000 genomes]
rs10038251	0.89[ASN][1000 genomes]
rs10038367	0.88[ASN][1000 genomes]
rs10042459	0.84[ASN][1000 genomes]
rs10043839	0.92[ASN][1000 genomes]
rs10043891	0.89[ASN][1000 genomes]
rs10044538	0.89[ASN][1000 genomes]
rs10053469	0.89[ASN][1000 genomes]
rs10056173	0.89[ASN][1000 genomes]
rs10057182	0.89[ASN][1000 genomes]
rs10065482	0.89[ASN][1000 genomes]
rs10065874	0.80[ASN][1000 genomes]
rs10066459	0.85[ASN][1000 genomes]
rs10068069	0.82[ASN][1000 genomes]
rs10071870	0.89[ASN][1000 genomes]
rs10473206	0.82[ASN][1000 genomes]
rs10473210	0.89[ASN][1000 genomes]
rs10473211	0.89[ASN][1000 genomes]
rs10473214	0.85[ASN][1000 genomes]
rs10941521	0.80[ASN][1000 genomes]
rs10941522	0.89[ASN][1000 genomes]
rs11744569	0.89[ASN][1000 genomes]
rs11949581	0.89[ASN][1000 genomes]
rs12188666	0.87[ASN][1000 genomes]
rs12513529	0.89[ASN][1000 genomes]
rs12518018	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1363847	0.86[ASN][1000 genomes]
rs1553578	0.85[ASN][1000 genomes]
rs1553579	0.89[ASN][1000 genomes]
rs2194204	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35693860	0.89[ASN][1000 genomes]
rs3805498	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3805499	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4599576	0.84[ASN][1000 genomes]
rs4957334	0.89[ASN][1000 genomes]
rs4957336	0.89[ASN][1000 genomes]
rs4957337	0.89[ASN][1000 genomes]
rs4957338	0.89[ASN][1000 genomes]
rs4957339	0.89[ASN][1000 genomes]
rs4957343	0.95[ASN][1000 genomes]
rs4957347	0.86[ASN][1000 genomes]
rs62356460	0.84[ASN][1000 genomes]
rs62356461	0.89[ASN][1000 genomes]
rs62358056	0.86[ASN][1000 genomes]
rs62358796	0.89[ASN][1000 genomes]
rs62358800	0.88[ASN][1000 genomes]
rs6860233	0.80[ASN][1000 genomes]
rs6884507	0.85[ASN][1000 genomes]
rs72747928	0.89[ASN][1000 genomes]
rs72747930	0.89[ASN][1000 genomes]
rs72747940	0.86[ASN][1000 genomes]
rs72747952	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72747958	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9292784	0.87[ASN][1000 genomes]
rs9292785	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880539	chr5:40662257-40713645	Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:40680800-40690800	Transcr. at gene 5' and 3'	Dnd41	blood
2	chr5:40682400-40691400	Weak transcription	Spleen	Spleen
3	chr5:40682800-40691400	Weak transcription	Lung	lung
4	chr5:40683000-40691600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr5:40683000-40691600	Weak transcription	Esophagus	oesophagus
6	chr5:40683000-40692000	Weak transcription	Gastric	stomach
7	chr5:40683800-40691600	Weak transcription	Fetal Muscle Trunk	muscle
8	chr5:40684000-40700600	Weak transcription	Left Ventricle	heart
9	chr5:40684600-40691600	Weak transcription	Fetal Stomach	stomach
10	chr5:40684600-40700400	Weak transcription	Right Ventricle	heart
11	chr5:40685400-40691800	Weak transcription	Fetal Muscle Leg	muscle
12	chr5:40685400-40692000	Weak transcription	Aorta	Aorta
13	chr5:40685600-40690800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr5:40685800-40691600	Weak transcription	Colonic Mucosa	Colon
15	chr5:40686800-40690800	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
16	chr5:40686800-40692000	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr5:40687800-40691800	Weak transcription	Small Intestine	intestine
18	chr5:40688000-40691600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr5:40688200-40691000	Enhancers	Primary T killer memory cells from peripheral blood	blood
20	chr5:40688200-40693800	Genic enhancers	Primary T helper cells fromperipheralblood	blood
21	chr5:40688400-40696400	Weak transcription	Liver	Liver
22	chr5:40688400-40700400	Weak transcription	Stomach Mucosa	stomach
23	chr5:40688600-40690800	Genic enhancers	Rectal Mucosa Donor 31	rectum
24	chr5:40688600-40690800	Enhancers	NHDF-Ad	bronchial
25	chr5:40688600-40691000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
26	chr5:40688800-40690800	Enhancers	A549	lung
27	chr5:40688800-40691200	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr5:40688800-40691400	Weak transcription	Primary B cells from peripheral blood	blood
29	chr5:40688800-40691600	Weak transcription	Rectal Smooth Muscle	rectum
30	chr5:40688800-40691800	Weak transcription	Fetal Intestine Large	intestine
31	chr5:40688800-40691800	Weak transcription	Thymus	Thymus
32	chr5:40688800-40692000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr5:40688800-40692800	Genic enhancers	Primary T cells fromperipheralblood	blood
34	chr5:40688800-40694600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr5:40688800-40696800	Weak transcription	Fetal Lung	lung
36	chr5:40688800-40697000	Strong transcription	Fetal Thymus	thymus
37	chr5:40688800-40718600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr5:40689000-40691200	Genic enhancers	Primary T cells from cord blood	blood
39	chr5:40689000-40691400	Weak transcription	Stomach Smooth Muscle	stomach
40	chr5:40689000-40691800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr5:40689000-40692000	Weak transcription	Primary B cells from cord blood	blood
42	chr5:40689200-40691000	Enhancers	Muscle Satellite Cultured Cells	--
43	chr5:40689200-40691200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr5:40689400-40690800	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
45	chr5:40689400-40691000	Enhancers	Pancreatic Islets	Pancreatic Islet
46	chr5:40689600-40693000	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr5:40689600-40694400	Strong transcription	Primary hematopoietic stem cells	blood
48	chr5:40689800-40690800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr5:40690000-40691000	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
50	chr5:40690000-40692800	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood

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