Variant report

Variant	rs10473206
Chromosome Location	chr5:40648845-40648846
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10035697	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10038251	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10038367	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10040364	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10043839	0.86[ASN][1000 genomes]
rs10043891	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10044538	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10053469	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10055624	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10056173	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10057182	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10063818	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10063864	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10064394	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10065482	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10065874	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10065894	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10066459	0.88[CEU][hapmap];0.82[ASN][1000 genomes]
rs10068069	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10071117	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10071870	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10073344	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10473209	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10473210	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10473211	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10473214	0.83[ASN][1000 genomes]
rs10941521	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10941522	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11744569	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11744700	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11745462	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11745901	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11949581	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11952914	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11955037	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12188666	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12513529	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs1395082	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1553578	0.83[ASN][1000 genomes]
rs1553579	0.86[ASN][1000 genomes]
rs17238368	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17835256	0.82[ASN][1000 genomes]
rs28820606	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28862949	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35693860	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4599576	0.83[ASN][1000 genomes]
rs4957333	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4957334	0.92[CEU][hapmap];0.90[CHB][hapmap];0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4957336	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4957337	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4957338	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4957339	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs62356460	0.81[ASN][1000 genomes]
rs62356461	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs62358056	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs62358796	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs62358800	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6860233	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6867169	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6879155	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6879329	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6884507	0.82[ASN][1000 genomes]
rs6892451	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72747928	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs72747930	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs72747940	0.82[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs7349788	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7714305	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7726047	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7729332	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9292784	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9292785	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880993	chr5:40521648-40682550	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	38 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10473206	RPL37	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:40644000-40654600	Weak transcription	Small Intestine	intestine
2	chr5:40646400-40652400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr5:40646600-40652400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr5:40647200-40652400	Weak transcription	Duodenum Mucosa	Duodenum
5	chr5:40648000-40650200	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr5:40648000-40650400	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr5:40648000-40650400	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr5:40648200-40649400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr5:40648200-40650800	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr5:40648200-40653200	Enhancers	Primary T cells from cord blood	blood
11	chr5:40648400-40649000	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr5:40648400-40649800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr5:40648400-40650200	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr5:40648400-40650600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr5:40648400-40650800	Enhancers	Fetal Thymus	thymus
16	chr5:40648400-40651000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr5:40648400-40651200	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr5:40648400-40651600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr5:40648400-40652400	Enhancers	Dnd41	blood
20	chr5:40648600-40651800	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr5:40648800-40649800	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr5:40648800-40650400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
23	chr5:40648800-40652600	Weak transcription	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links