Variant report

Variant	rs3792827
Chromosome Location	chr5:40745333-40745334
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:40743527..40746341-chr5:40834404..40836606,2	MCF-7	breast:
2	chr5:40738727..40741044-chr5:40742563..40745555,2	K562	blood:

Variant related genes	Relation type
ENSG00000145592	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10035235	1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs10053664	0.89[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10062565	0.83[JPT][hapmap]
rs10066459	1.00[JPT][hapmap];0.92[YRI][hapmap]
rs10069737	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1015027	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10941525	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11747210	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs12514352	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12517210	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12520058	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12523329	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1363847	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2270625	0.83[JPT][hapmap]
rs2291782	0.83[JPT][hapmap]
rs3792824	0.96[ASN][1000 genomes]
rs3805489	1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs3805490	1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs3805492	1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs3805494	1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs3805499	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3816959	0.84[JPT][hapmap]
rs4957334	1.00[JPT][hapmap];0.85[YRI][hapmap]
rs4957350	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62357564	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6868112	0.83[JPT][hapmap]
rs7719692	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7721093	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7725810	0.83[JPT][hapmap]
rs9800106	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3792827	RPL37	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:40722800-40755200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr5:40728200-40745600	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr5:40736000-40747200	Weak transcription	HMEC	breast
4	chr5:40736000-40755200	Weak transcription	Pancreas	Pancrea
5	chr5:40736200-40754200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr5:40736400-40746400	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr5:40736400-40747000	Weak transcription	Small Intestine	intestine
8	chr5:40736400-40753800	Weak transcription	Fetal Heart	heart
9	chr5:40736400-40754200	Weak transcription	Gastric	stomach
10	chr5:40736400-40754200	Weak transcription	NHLF	lung
11	chr5:40736600-40754200	Weak transcription	Osteobl	bone
12	chr5:40738000-40754200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr5:40739400-40754200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr5:40739800-40754200	Weak transcription	NHEK	skin
15	chr5:40740200-40745800	Strong transcription	Hela-S3	cervix
16	chr5:40740800-40746400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr5:40740800-40754200	Weak transcription	HSMMtube	muscle
18	chr5:40741000-40754200	Weak transcription	Colonic Mucosa	Colon
19	chr5:40741200-40746000	Strong transcription	Primary T cells fromperipheralblood	blood
20	chr5:40741600-40746600	Weak transcription	Rectal Smooth Muscle	rectum
21	chr5:40741600-40754200	Weak transcription	K562	blood
22	chr5:40741800-40745400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr5:40741800-40745800	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr5:40741800-40746200	Weak transcription	HUVEC	blood vessel
25	chr5:40741800-40746400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr5:40741800-40746600	Weak transcription	Colon Smooth Muscle	Colon
27	chr5:40741800-40746600	Weak transcription	A549	lung
28	chr5:40741800-40746800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr5:40741800-40746800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr5:40741800-40746800	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr5:40741800-40751200	Weak transcription	Primary hematopoietic stem cells	blood
32	chr5:40741800-40752000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr5:40741800-40753800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr5:40741800-40754000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr5:40741800-40754200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr5:40741800-40754200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr5:40741800-40754200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr5:40741800-40754200	Weak transcription	Brain Cingulate Gyrus	brain
39	chr5:40741800-40754200	Weak transcription	Fetal Brain Male	brain
40	chr5:40741800-40754200	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr5:40741800-40754200	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr5:40741800-40754200	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr5:40741800-40754200	Weak transcription	Stomach Smooth Muscle	stomach
44	chr5:40741800-40754200	Weak transcription	NH-A	brain
45	chr5:40741800-40754400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr5:40741800-40754400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr5:40741800-40754400	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr5:40742000-40745400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr5:40742000-40745400	Weak transcription	Duodenum Mucosa	Duodenum
50	chr5:40742000-40745400	Weak transcription	Fetal Lung	lung

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