Variant report

Variant	rs7719692
Chromosome Location	chr5:40743972-40743973
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:40743527..40746341-chr5:40834404..40836606,2	MCF-7	breast:
2	chr5:40741850..40745005-chr5:40826482..40830579,3	K562	blood:
3	chr5:40738727..40741044-chr5:40742563..40745555,2	K562	blood:

Variant related genes	Relation type
ENSG00000145592	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10035235	1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs10053664	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10062565	0.84[JPT][hapmap]
rs10066459	1.00[JPT][hapmap];0.92[YRI][hapmap]
rs10069737	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1015027	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10941525	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11747210	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs12514352	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12517210	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12520058	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12523329	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1363847	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2270625	0.84[JPT][hapmap]
rs2291782	0.84[JPT][hapmap]
rs3792824	0.96[ASN][1000 genomes]
rs3792827	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3805489	1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs3805490	1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs3805492	1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs3805494	1.00[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs3805499	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3816959	0.84[JPT][hapmap]
rs4957334	1.00[JPT][hapmap];0.85[YRI][hapmap]
rs4957350	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62357564	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6868112	0.84[JPT][hapmap]
rs7721093	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7725810	0.84[JPT][hapmap]
rs9800106	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7719692	RPL37	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:40709600-40745000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr5:40722800-40755200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr5:40728200-40745600	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr5:40736000-40747200	Weak transcription	HMEC	breast
5	chr5:40736000-40755200	Weak transcription	Pancreas	Pancrea
6	chr5:40736200-40754200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr5:40736400-40746400	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr5:40736400-40747000	Weak transcription	Small Intestine	intestine
9	chr5:40736400-40753800	Weak transcription	Fetal Heart	heart
10	chr5:40736400-40754200	Weak transcription	Gastric	stomach
11	chr5:40736400-40754200	Weak transcription	NHLF	lung
12	chr5:40736600-40754200	Weak transcription	Osteobl	bone
13	chr5:40738000-40754200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr5:40739400-40754200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr5:40739800-40754200	Weak transcription	NHEK	skin
16	chr5:40740200-40745800	Strong transcription	Hela-S3	cervix
17	chr5:40740800-40746400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr5:40740800-40754200	Weak transcription	HSMMtube	muscle
19	chr5:40741000-40754200	Weak transcription	Colonic Mucosa	Colon
20	chr5:40741200-40746000	Strong transcription	Primary T cells fromperipheralblood	blood
21	chr5:40741600-40746600	Weak transcription	Rectal Smooth Muscle	rectum
22	chr5:40741600-40754200	Weak transcription	K562	blood
23	chr5:40741800-40744000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr5:40741800-40744000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr5:40741800-40744000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr5:40741800-40744200	Strong transcription	Primary B cells from cord blood	blood
27	chr5:40741800-40744400	Strong transcription	Dnd41	blood
28	chr5:40741800-40744600	Weak transcription	HSMM	muscle
29	chr5:40741800-40744800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr5:40741800-40745400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr5:40741800-40745800	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr5:40741800-40746200	Weak transcription	HUVEC	blood vessel
33	chr5:40741800-40746400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr5:40741800-40746600	Weak transcription	Colon Smooth Muscle	Colon
35	chr5:40741800-40746600	Weak transcription	A549	lung
36	chr5:40741800-40746800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr5:40741800-40746800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr5:40741800-40746800	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr5:40741800-40751200	Weak transcription	Primary hematopoietic stem cells	blood
40	chr5:40741800-40752000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr5:40741800-40753800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr5:40741800-40754000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr5:40741800-40754200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr5:40741800-40754200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr5:40741800-40754200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr5:40741800-40754200	Weak transcription	Brain Cingulate Gyrus	brain
47	chr5:40741800-40754200	Weak transcription	Fetal Brain Male	brain
48	chr5:40741800-40754200	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr5:40741800-40754200	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr5:40741800-40754200	Weak transcription	Skeletal Muscle Female	skeletal muscle

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