Variant report

Variant	rs11958655
Chromosome Location	chr5:167400453-167400454
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1422930	0.93[CEU][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1422931	0.93[CEU][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17069484	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830546	chr5:167303135-167456271	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2424408	chr5:167400340-167401952	Weak transcription Enhancers Genic enhancers Strong transcription	n/a	n/a	inside rSNPs	diseases
3	esv3322324	chr5:167400349-167402397	Strong transcription Enhancers Weak transcription Genic enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167385800-167407400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr5:167387800-167400600	Weak transcription	Right Atrium	heart
3	chr5:167388200-167407600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:167391600-167410200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr5:167395200-167406800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr5:167395800-167400800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr5:167396200-167407000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr5:167396400-167401600	Weak transcription	NHEK	skin
9	chr5:167397000-167407800	Weak transcription	Left Ventricle	heart
10	chr5:167397200-167420800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr5:167399800-167400600	Enhancers	Fetal Lung	lung
12	chr5:167399800-167400800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr5:167400200-167405800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr5:167400400-167400800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr5:167400400-167400800	Enhancers	Right Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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